References
1. Davison AJ, Wright KM, Harrach B. DNA sequence of frog adenovirus.Journal of General Virology. 2000;81:2431-2439.
2. Kovács ER, Benko M. Complete sequence of raptor adenovirus 1 confirms the characteristic genome organization of siadenoviruses.Infection Genetics and Evolution. 2011;11(5):1058-1065.
3. Benko M, Aoki K, Arnberg N, et al. ICTV Virus Taxonomy Profile: Adenoviridae 2022. J Gen Virol. 2022;103(3).
4. Nguyen TH, Ballmann MZ, Do HT, et al. Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains. Virology Journal. 2016;13.
5. Singh AK, Berbís MA, Ballmann MZ, et al. Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3. Plos One. 2015;10(9).
6. Harrach B, Tarjan ZL, Benko M. Adenoviruses across the animal kingdom: a walk in the zoo. FEBS Lett. 2019;593(24):3660-3673.
7. Athukorala A, Phalen DN, Das A, Helbig KJ, Forwood JK, Sarker S. Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). Viruses. 2021;13(9).
8. Lee TWR, Blair GE, Matthews DA. Adenovirus core protein VII contains distinct sequences that mediate targeting to the nucleus and nucleolus, and colocalization with human chromosomes. J Gen Virol.2003;84(Pt 12):3423-3428.
9. Wickham TJ, Mathias P, Cheresh DA, Nemerow GR. Integrins alpha v beta 3 and alpha v beta 5 promote adenovirus internalization but not virus attachment. Cell. 1993;73(2):309-319.
10. Wodrich H, Cassany A, D’Angelo MA, Guan T, Nemerow G, Gerace L. Adenovirus core protein pVII is translocated into the nucleus by multiple import receptor pathways. J Virol.2006;80(19):9608-9618.
11. Greber UF, Suomalainen M. Adenovirus entry: Stability, uncoating, and nuclear import. Mol Microbiol. 2022;118(4):309-320.
12. Hindley CE, Lawrence FJ, Matthews DA. A role for transportin in the nuclear import of adenovirus core proteins and DNA. Traffic.2007;8(10):1313-1322.
13. Gorlich D, Kostka S, Kraft R, et al. Two different subunits of importin cooperate to recognize nuclear localization signals and bind them to the nuclear envelope. Curr Biol. 1995;5(4):383-392.
14. Timney BL, Raveh B, Mironska R, et al. Simple rules for passive diffusion through the nuclear pore complex. The Journal of cell biology. 2016;215(1):57-76.
15. Dingwall C, Robbins J, Dilworth SM, Roberts B, Richardson WD. The nucleoplasmin nuclear location sequence is larger and more complex than that of SV-40 large T antigen. The Journal of cell biology.1988;107(3):841-849.
16. Kalderon D, Richardson WD, Markham AF, Smith AE. Sequence requirements for nuclear location of simian virus 40 large-T antigen.Nature. 1984;311(5981):33-38.
17. Alvisi G, Jans DA, Camozzi D, et al. Regulated transport into the nucleus of herpesviridae DNA replication core proteins. Viruses.2013;5(9):2210-2234.
18. Cingolani G, Bednenko J, Gillespie MT, Gerace L. Molecular basis for the recognition of a nonclassical nuclear localization signal by importin beta. Mol Cell. 2002;10(6):1345-1353.
19. Conti E, Uy M, Leighton L, Blobel G, Kuriyan J. Crystallographic analysis of the recognition of a nuclear localization signal by the nuclear import factor karyopherin alpha. Cell.1998;94(2):193-204.
20. Fontes MR, Teh T, Kobe B. Structural basis of recognition of monopartite and bipartite nuclear localization sequences by mammalian importin-alpha. J Mol Biol. 2000;297(5):1183-1194.
21. Kosugi S, Hasebe M, Entani T, Takayama S, Tomita M, Yanagawa H. Design of peptide inhibitors for the importin alpha/beta nuclear import pathway by activity-based profiling. Chemistry & biology.2008;15(9):940-949.
22. Jumper J, Evans R, Pritzel A, et al. Highly accurate protein structure prediction with AlphaFold. Nature.2021;596(7873):583-589.
23. Hoad M, Cross EM, Donnelly CM, Sarker S, Roby JA, Forwood JK. Structural Characterization of Porcine Adeno-Associated Virus Capsid Protein with Nuclear Trafficking Protein Importin Alpha Reveals a Bipartite Nuclear Localization Signal. Viruses. 2023;15(2).
24. Teh T, Tiganis T, Kobe B. Crystallization of importin alpha, the nuclear-import receptor. Acta crystallographica Section D, Biological crystallography. 1999;55(Pt 2):561-563.
25. Alvisi G, Manaresi E, Cross EM, et al. Importin alpha/beta-dependent nuclear transport of human parvovirus B19 nonstructural protein 1 is essential for viral replication. Antiviral Res. 2023;213:105588.
26. Sinigalia E, Alvisi G, Mercorelli B, et al. Role of homodimerization of human cytomegalovirus DNA polymerase accessory protein UL44 in origin-dependent DNA replication in cells. J Virol.2008;82(24):12574-12579.
27. Dormann D, Madl T, Valori CF, et al. Arginine methylation next to the PY-NLS modulates Transportin binding and nuclear import of FUS.Embo Journal. 2012;31(22):4258-4275.
28. Gomez Corredor A, Archambault D. The bovine immunodeficiency virus rev protein: identification of a novel lentiviral bipartite nuclear localization signal harboring an atypical spacer sequence. J Virol. 2009;83(24):12842-12853.
29. Kino Y, Washizu C, Aquilanti E, et al. Intracellular localization and splicing regulation of FUS/TLS are variably affected by amyotrophic lateral sclerosis-linked mutations. Nucleic Acids Res.2011;39(7):2781-2798.
30. Tsujii A, Miyamoto Y, Moriyama T, et al. Retinoblastoma-binding Protein 4-regulated Classical Nuclear Transport Is Involved in Cellular Senescence. J Biol Chem. 2015;290(49):29375-29388.
31. Heilman DW, Teodoro JG, Green MR. Apoptin nucleocytoplasmic shuttling is required for cell type-specific localization, apoptosis, and recruitment of the anaphase-promoting complex/cyclosome to PML bodies. Journal of Virology. 2006;80(15):7535-7545.
32. Roman N, Christie M, Swarbrick CM, Kobe B, Forwood JK. Structural characterisation of the nuclear import receptor importin alpha in complex with the bipartite NLS of Prp20. PLoS One.2013;8(12):e82038.
33. Studier FW. Protein production by auto-induction in high density shaking cultures. Protein Expr Purif. 2005;41(1):207-234.
34. Cross EM, Akbari N, Ghassabian H, et al. A functional and structural comparative analysis of Large Tumor Antigens reveals evolution of different importin alpha-dependent nuclear localization signals.Protein Sci. 2023.
35. Cross EM, Marin O, Ariawan D, et al. Structural determinants of phosphorylation-dependent nuclear transport of HCMV DNA polymerase processivity factor UL44. FEBS Lett. 2023.
36. Aragao D, Aishima J, Cherukuvada H, et al. MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron. J Synchrotron Radiat. 2018;25(Pt 3):885-891.
37. Battye TG, Kontogiannis L, Johnson O, Powell HR, Leslie AG. iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.Acta crystallographica Section D, Biological crystallography.2011;67(Pt 4):271-281.
38. Evans PR. An introduction to data reduction: space-group determination, scaling and intensity statistics. Acta Crystallogr D. 2011;67:282-292.
39. Emsley P, Lohkamp B, Scott WG, Cowtan K. Features and development of Coot. Acta crystallographica Section D, Biological crystallography. 2010;66(Pt 4):486-501.
40. Adams PD, Afonine PV, Bunkoczi G, et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta crystallographica Section D, Biological crystallography. 2010;66(Pt 2):213-221.
41. McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. Phaser crystallographic software. J Appl Crystallogr.2007;40(Pt 4):658-674.
42. Messa L, Celegato M, Bertagnin C, et al. The Dimeric Form of HPV16 E6 Is Crucial to Drive YAP/TAZ Upregulation through the Targeting of hScrib. Cancers. 2021;13(16).
43. Di Antonio V, Palu G, Alvisi G. Live-Cell Analysis of Human Cytomegalovirus DNA Polymerase Holoenzyme Assembly by Resonance Energy Transfer Methods. Microorganisms. 2021;9(5).
44. Alvisi G, Jans D, Ripalti A. Human cytomegalovirus (HCMV) DNA polymerase processivity factor ppUL44 dimerizes in the cytosol before translocation to the nucleus. Biochemistry.2006;45(22):6866-6872.
45. Alvisi G, Paolini L, Contarini A, et al. Intersectin goes nuclear: secret life of an endocytic protein. The Biochemical journal.2018;475(8):1455-1472.
46. Smith KM, Di Antonio V, Bellucci L, et al. Contribution of the residue at position 4 within classical nuclear localization signals to modulating interaction with importins and nuclear targeting.Biochim Biophys Acta. 2018;1865(8):1114-1129.
47. Athukorala A, Donnelly CM, Pavan S, et al. Structural and functional characterization of siadenovirus core protein VII nuclear localization demonstrates the existence of multiple nuclear transport pathways.J Gen Virol. 2024;105(1).
48. Alvisi G, Jans D, Guo J, Pinna L, Ripalti A. A protein kinase CK2 site flanking the nuclear targeting signal enhances nuclear transport of human cytomegalovirus ppUL44. Traffic. 2005;6(11):1002-1013.
49. Alvisi G, Avanzi S, Musiani D, et al. Nuclear import of HSV-1 DNA polymerase processivity factor UL42 is mediated by a C-terminally located bipartite nuclear localization signal. Biochemistry.2008;47(52):13764-13777.
50. Kulanayake S, Tikoo SK. Adenovirus Core Proteins: Structure and Function. Viruses. 2021;13(3).
51. Anand SK, Gaba A, Singh J, Tikoo SK. Bovine adenovirus 3 core protein precursor pVII localizes to mitochondria, and modulates ATP synthesis, mitochondrial Ca<SUP>2+</SUP> and mitochondrial membrane potential. Journal of General Virology.2014;95:442-452.
52. Chook YM, Suel KE. Nuclear import by karyopherin-betas: recognition and inhibition. Biochim Biophys Acta. 2011;1813(9):1593-1606.
53. Suarez M, Canclini L, Esteves A. Identification of a non-classical three-dimensional nuclear localization signal in the intestinal fatty acid binding protein. PLoS One. 2020;15(11):e0242312.
54. Heilman DW, Teodoro JG, Green MR. Apoptin nucleocytoplasmic shuttling is required for cell type-specific localization, apoptosis, and recruitment of the anaphase-promoting complex/cyclosome to PML bodies. J Virol. 2006;80(15):7535-7545.