References
Abele LG (1976) Comparative species richness in fluctuating and constant
environments: coral-associated decapod crustaceans. Science
192:461–463.
Abele LG, Patton WK (1976) The size of coral heads and the community
biology of associated decapod crustaceans. Journal of Biogeography 3:35.
Altieri AH, Silliman BR, Bertness MD (2007) Hierarchical organization
via a facilitation cascade in intertidal cordgrass bed communities. The
American Naturalist 169:195–206.
Angelini C, van der Heide T, Griffin JN, Morton JP, Derksen-Hooijberg M,
Lamers LPM, Smolders AJP, Silliman BR (2015) Foundation species’ overlap
enhances biodiversity and multifunctionality from the patch to landscape
scale in southeastern United States salt marshes. Proc R Soc B
282:20150421.
Bates D, Mächler M, Bolker B, Walker S (2015) Fitting linear
mixed-effects models using lme4. J Stat Soft 67.
Britayev TA, Spiridonov VA, Deart YV, El-Sherbiny M (2017) Biodiversity
of the community associated with Pocillopora verrucosa(Scleractinia: Pocilloporidae) in the Red Sea. Mar Biodiv 47:1093–1109.
Byrnes JE, Reed DC, Cardinale BJ, Cavanaugh KC, Holbrook SJ, Schmitt RJ
(2011) Climate-driven increases in storm frequency simplify kelp forest
food webs: climate change and kelp forest food webs. Global Change
Biology 17:2513–2524.
Cai W, Wang G, Santoso A, McPhaden MJ, Wu L, Jin F-F, Timmermann A,
Collins M, Vecchi G, Lengaigne M, England MH, Dommenget D, Takahashi K,
Guilyardi E (2015) Increased frequency of extreme La Niña events under
greenhouse warming. Nature Clim Change 5:132–137.
Campbell S, Kartawijaya T, Sabarini E (2011) Connectivity in reef fish
assemblages between seagrass and coral reef habitats. Aquat Biol
13:65–77.
Canizales-Flores HM, Rodríguez-Troncoso AP, Rodríguez-Zaragoza FA,
Cupul-Magaña AL (2021) A long-term symbiotic relationship: recruitment
and fidelity of the crab Trapezia on its coral hostPocillopora . Diversity 13:450.
Chao A, Colwell RK, Lin C-W, Gotelli NJ (2009) Sufficient sampling for
asymptotic minimum species richness estimators. Ecology 90:1125–1133.
Chao A, Ma KH, Hsieh TC, Chiu C (2016) SpadeR: Species-richness
prediction and diversity estimation with R.
Chapin FS, Walker BH, Hobbs RJ, Hooper DU, Lawton JH, Sala OE, Tilman D
(1997) Biotic Control over the Functioning of Ecosystems. Science
277:500–504.
Colwell RK, Elsensohn JE (2014) EstimateS turns 20: statistical
estimation of species richness and shared species from samples, with
non-parametric extrapolation. Ecography 37:609–613.
Dayton PK, Hessler RR (1972) Role of biological disturbance in
maintaining diversity in the deep sea. Deep Sea Research and
Oceanographic Abstracts 19:199–208.
Dayton PK, Tegner MJ, Parnell PE, Edwards PB (1992) Temporal and spatial
patterns of disturbance and recovery in a kelp forest community.
Ecological Monographs 62:421–445.
De Boeck HJ, Bloore JMG, Kreyling, J, Ransijn, J. C. G., Nijs, I.,
Jentsch, A., Zeiter, M. (2018) Patterns and drivers of
biodiversity-stability relationships under climate extremes. J Ecol
106:1320–1320.
Duffy JE, Reynolds PL, Boström C, Coyer JA, Cusson M, Donadi S, Douglass
JG, Eklöf JS, Engelen AH, Eriksson BK, Fredriksen S, Gamfeldt L,
Gustafsson C, Hoarau G, Hori M, Hovel K, Iken K, Lefcheck JS, Moksnes
P-O, Nakaoka M, O’Connor MI, Olsen JL, Richardson JP, Ruesink JL, Sotka
EE, Thormar J, Whalen MA, Stachowicz JJ (2015) Biodiversity mediates
top-down control in eelgrass ecosystems: a global
comparative-experimental approach. Ecol Lett 18:696–705.
Edgar GJ, Banks SA, Brandt M, Bustamante RH, Chiriboga A, Earle SA,
Garske LE, Glynn PW, Grove JS, Henderson S, Hickman CP, Miller KA,
Rivera F, Wellington GM (2010) El Niño, grazers and fisheries interact
to greatly elevate extinction risk for Galapagos marine species: El
Niño, grazers and fisheries interact with Galápagos marine species.
Global Change Biology 16:2876–2890.
Ellison AM, Bank MS, Clinton BD, Colburn EA, Katherine Elliott, Ford CR
(2005) Loss of foundation species: consequences for the structure and
dynamics of forested ecosystems. Frontiers in Ecology and the
Environment 3:479–486.
Glynn PW (2009) Rapid recovery of a coral reef at Darwin Island,
Galapagos Islands. Galapagos research 66:6–13.
Glynn PW (1976) Some physical and biological determinants of coral
community structure in the Eastern Pacific. Ecological Monographs
46:431–456.
Glynn PW (1984) Widespread Coral Mortality and the 1982–83 El Niño
Warming Event. Envir Conserv 11:133–146.
Glynn PW, Feingold JS, Baker A, Banks S, Baums IB, Cole J, Colgan MW,
Fong P, Glynn PJ, Keith I, Manzello D, Riegl B, Ruttenberg BI, Smith TB,
Vera-Zambrano M (2018) State of corals and coral reefs of the Galápagos
Islands (Ecuador): Past, present and future. Marine Pollution Bulletin
133:717–733.
Glynn PW, Manzello DP, Enochs IC (eds) (2017) Coral reefs of the Eastern
Tropical Pacific: persistence and loss in a dynamic environment.
Springer Netherlands, Dordrecht.
Glynn PW, Maté JL, Baker AC, Calderón M (2001) Coral bleaching and
mortality in Panama and Ecuador during the 1997-1998 El Niño Southern
Oscillation Event: spatial, temporal patterns and comparisons with the
1982-1983 event. Bulletin of Marine Science 69:79–109.
González-Espinosa PC, Donner SD (2020) Predicting cold-water bleaching
in corals: the role of temperature, and potential integration of light
exposure. Marine Ecology Progress Series 642:133–146.
Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and
pitfalls in the measurement and comparison of species richness. Ecology
Letters 4:379–391.
Hadfield MG, Paul VJ (2001) Natural chemical cues for settlement and
metamorphosis of marine invertebrate larvae. In: Marine chemical
ecology . CRC Press, Boca Raton, Florida, USA, p 431–461
Hanski I, Ovaskainen O (2002) Extinction debt at extinction threshold.
Conservation Biology 16:666–673.
Hickman CP (1999) A field guide to marine molluscs of Galápagos. An
illustrated guidebook to the common intertidal and shallow-water snails,
bivalves, and chitons of the Galapagos Islands. Sugar Spring Press,
Lexington, VA USA.
Hickman CP, Zimmerman TL (2000) A field guide to crustaceans of
Galapagos: an illustrated guidebook to the common barnacles, shrimps,
lobsters, and crabs of the Galapagos Islands.
Hoegh-Guldberg O, Bruno JF (2010) The impact of climate change on the
world’s marine ecosystems. Science 328:1523–1528.
Holmgren M, Scheffer M, Ezcurra E, Gutiérrez JR, Mohren GMJ (2001) El
Niño effects on the dynamics of terrestrial ecosystems. Trends in
Ecology & Evolution 16:89–94.
Hughes TP, Kerry JT, Álvarez-Noriega M, Álvarez-Romero JG, Anderson KD,
Baird AH, Babcock RC, Beger M, Bellwood DR, Berkelmans R, Bridge TC,
Butler IR, Byrne M, Cantin NE, Comeau S, Connolly SR, Cumming GS, Dalton
SJ, Diaz-Pulido G, Eakin CM, Figueira WF, Gilmour JP, Harrison HB, Heron
SF, Hoey AS, Hobbs J-PA, Hoogenboom MO, Kennedy EV, Kuo C, Lough JM,
Lowe RJ, Liu G, McCulloch MT, Malcolm HA, McWilliam MJ, Pandolfi JM,
Pears RJ, Pratchett MS, Schoepf V, Simpson T, Skirving WJ, Sommer B,
Torda G, Wachenfeld DR, Willis BL, Wilson SK (2017) Global warming and
recurrent mass bleaching of corals. Nature 543:373–377.
Hylander K, Ehrlén J (2013) The mechanisms causing extinction debts.
Trends in Ecology & Evolution 28:341–346.
Idjadi J, Edmunds P (2006) Scleractinian corals as facilitators for
other invertebrates on a Caribbean reef. Mar Ecol Prog Ser 319:117–127.
Kemp DW, Oakley CA, Thornhill DJ, Newcomb LA, Schmidt GW, Fitt WK (2011)
Catastrophic mortality on inshore coral reefs of the Florida Keys due to
severe low-temperature stress. Glob Change Biol 17:3468–3477.
Kritzer J, Sale P (2006) The metapopulation ecology of coral reef
fishes. In: Marine Metapopulations . Elsevier, p 31–67
Kuussaari M, Bommarco R, Heikkinen RK, Helm A, Krauss J, Lindborg R,
Öckinger E, Pärtel M, Pino J, Rodà F, Stefanescu C, Teder T, Zobel M,
Steffan-Dewenter I (2009) Extinction debt: a challenge for biodiversity
conservation. Trends in Ecology & Evolution 24:564–571.
Lirman D, Schopmeyer S, Manzello D, Gramer LJ, Precht WF, Muller-Karger
F, Banks K, Barnes B, Bartels E, Bourque A, Byrne J, Donahue S,
Duquesnel J, Fisher L, Gilliam D, Hendee J, Johnson M, Maxwell K,
McDevitt E, Monty J, Rueda D, Ruzicka R, Thanner S (2011) Severe 2010
cold-water event caused unprecedented mortality to corals of the Florida
reef tract and reversed previous survivorship patterns. PLoS ONE
6:e23047.
MacArthur RH, MacArthur JW (1961) On Bird Species Diversity. Ecology
42:594–598.
McCook L, Jompa J, Diaz-Pulido G (2001) Competition between corals and
algae on coral reefs: a review of evidence and mechanisms. Coral Reefs
19:400–417.
Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D,
Minchin PR, O’Hara RB, Simpson GL, Solymos M, Stevens HR, Szoecs E,
Wagner H (2020) Vegan: Community ecology package.
Osland MJ, Enwright N, Day RH, Doyle TW (2013) Winter climate change and
coastal wetland foundation species: salt marshes vs. mangrove forests in
the southeastern United States. Glob Change Biol 19:1482–1494.
Pandolfi JM, Connolly SR, Marshall DJ, Cohen AL (2011) Projecting coral
reef futures under global warming and ocean acidification. Science
333:418–422.
Paz-García DA, Balart EF, García-de-Léon FJ (2012) Cold water bleaching
of Pocillopora in the Gulf of California. Proceedings of the 12th
International Coral Reef Symposium (Cairns, QLD).
Ramsey F, Schafer D (2012) The Statistical Sleuth: A Course in Methods
of Data Analysis, 2nd Edition. Wadsworth Group, Pacific Grove.
Ridding LE, Newton AC, Keith SA, Walls RM, Diaz A, Pywell RF, Bullock JM
(2021) Inconsistent detection of extinction debts using different
methods. Ecography 44:33–43.
Rodríguez-Troncoso AP, Carpizo-Ituarte E, Cupul-Magaña A (2013)
Oxidative damage associated with thermal stress in Pocillopora verrucosa
from the Mexican Pacific. Cienc Mar 39:113–118.
Seibold S, Bässler C, Brandl R, Gossner MM, Thorn S, Ulyshen MD, Müller
J (2015) Experimental studies of dead-wood biodiversity — A review
identifying global gaps in knowledge. Biological Conservation
191:139–149.
Sorte CJB, Davidson VE, Franklin MC, Benes KM, Doellman MM, Etter RJ,
Hannigan RE, Lubchenco J, Menge BA (2017) Long‐term declines in an
intertidal foundation species parallel shifts in community composition.
Glob Change Biol 23:341–352.
Stella JS, Munday PL, Jones GP (2011) Effects of coral bleaching on the
obligate coral-dwelling crab Trapezia cymodoce . Coral Reefs
30:719–727.
Stewart HL, Holbrook SJ, Schmitt RJ, Brooks AJ (2006) Symbiotic crabs
maintain coral health by clearing sediments. Coral Reefs 25:609–615.
Stokland JN, Siitonen J, Jonsson BG (2012) Biodiversity in dead wood.
Cambridge University Press.
Stone L, Eilam E, Abelson A, Ilan M (1996) Modelling coral reef
biodiversity and habitat destruction. Mar Ecol Prog Ser 134:299–302.
Thomson JA, Burkholder DA, Heithaus MR, Fourqurean JW, Fraser MW,
Statton J, Kendrick GA (2015) Extreme temperatures, foundation species,
and abrupt ecosystem change: an example from an iconic seagrass
ecosystem. Glob Change Biol 21:1463–1474.
Thorn S, Seibold S, Leverkus AB, Michler T, Müller J, Noss RF, Stork N,
Vogel S, Lindenmayer DB (2020) The living dead: acknowledging life after
tree death to stop forest degradation. Frontiers in Ecol & Environ
18:505–512.
Tilman D, May, Robert M., Lehman CL, Novak MA (1994) Habitat destruction
and the extinction debt. Nature 371:65–66.
Trathan PN, Forcada J, Murphy EJ (2007) Environmental forcing and
Southern Ocean marine predator populations: effects of climate change
and variability. Phil Trans R Soc B 362:2351–2365.
Watts K, Whytock RC, Park KJ, Fuentes-Montemayor E, Macgregor NA,
Duffield S, McGowan PJK (2020) Ecological time lags and the journey
towards conservation success. Nat Ecol Evol 4:304–311.
Wellington GM, Glynn PW, Strong AE, Navarrete SA, Wieters E, Hubbard D
(2001) Crisis on coral reefs linked to climate change. Eos Transactions
American Geophysical Union 82:1–5.
Witman JD (1985) Refuges, biological disturbance, and rocky subtidal
community structure in New England. Ecological Monographs 55:421–445.
Witman JD (1987) Subtidal coexistence: storms, grazing, mutualism, and
the zonation of kelps and mussels. Ecological Monographs 57:167–187.
Witman JD, Brandt M, Smith F (2010) Coupling between subtidal prey and
consumers along a mesoscale upwelling gradient in the Galápagos Islands.
Ecological Monographs 80:153–177.