References
Avise J.C. 2000. Phylogeography: the history and formation of species.
Cambridge, Mass: Harvard University Press.
Baken E.K., Mellenthin L.E., Adams D.C. 2020. Macroevolution of
desiccation-related morphology in plethodontid salamanders as inferred
from a novel surface area to volume ratio estimation approach.
Evolution. 74:476–486.
Baptestini E.M., de Aguiar M.A.M., Bar-Yam Y. 2013. Conditions for
neutral speciation via isolation by distance. J Theor Biol. 335:51–56.
Barbosa A.M. 2015. fuzzySim: applying fuzzy logic to binary similarity
indices in ecology. Methods in Ecology and Evolution. 6:853–858.
Beamer D.A., Lamb T. 2020. Towards rectifying limitations on species
delineation in dusky salamanders (Desmognathus: Plethodontidae): An
ecoregion-drainage sampling grid reveals additional cryptic clades.
Zootaxa. 4734:1–61.
Bergeron L.A., Besenbacher S., Zheng J., Li P., Bertelsen M.F., Quintard
B., Hoffman J.I., Li Z., St. Leger J., Shao C., Stiller J., Gilbert
M.T.P., Schierup M.H., Zhang G. 2023. Evolution of the germline mutation
rate across vertebrates. Nature.:1–7.
Bertl J., Ringbauer H., Blum M.G.B. 2018. Can secondary contact
following range expansion be distinguished from barriers to gene flow?
PeerJ. 6:e5325.
Bingham R.E., Papenfuss T.J., Lindstrand L., Wake D.B. 2018.
Phylogeography and Species Boundaries In the Hydromantes shastaeComplex, With Description of Two New Species (Amphibia; Caudata;
Plethodontidae). Bulletin of the Museum of Comparative Zoology.
161:403–427.
Bishop S.C., Valentine B.O. 1950. A New Species of Desmognathus from
Alabama. Copeia. 1950:39.
Bohonak A.J. 1999. Dispersal, Gene Flow, and Population Structure. The
Quarterly Review of Biology. 74:21–45.
Bradburd G.S., Coop G.M., Ralph P.L. 2018. Inferring Continuous and
Discrete Population Genetic Structure Across Space. Genetics.
210:33–52.
Bradburd G.S., Ralph P.L. 2019. Spatial Population Genetics: It’s About
Time. Annual Review of Ecology, Evolution, and Systematics. 50:427–449.
Brauer C.J., Unmack P.J., Smith S., Bernatchez L., Beheregaray L.B.
2018. On the roles of landscape heterogeneity and environmental
variation in determining population genomic structure in a dendritic
system. Molecular Ecology. 27:3484–3497.
Brown W.C., Bishop S.C. 1947. A New Species of Desmognathus from North
Carolina. Copeia. 1947:163.
Bruce R.C. 2022. Size and Cycle in Dusky Salamanders. Journal of
Herpetology. 56:444–453.
Burbrink F.T., Gehara M., McKelvy A.D., Myers E.A. 2021. Resolving
spatial complexities of hybridization in the context of the gray zone of
speciation in North American ratsnakes ( Pantherophis obsoletuscomplex). Evolution. 75:260–277.
Burbrink F.T., Ruane S., Rabibisoa N., Raselimanana A.P., Raxworthy
C.J., Kuhn A. 2023. Speciation rates are unrelated to the formation of
population structure in Malagasy gemsnakes. Ecology and Evolution.
13:e10344.
Capblancq T., Forester B.R. 2021. Redundancy analysis: A Swiss Army
Knife for landscape genomics. Methods in Ecology and Evolution.
12:2298–2309.
Carstens B.C., Smith M.L., Duckett D.J., Fonseca E.M., Thomé M.T.C.
2022. Assessing model adequacy leads to more robust phylogeographic
inference. Trends in Ecology & Evolution.
Carvalho C.S., Forester B.R., Mitre S.K., Alves R., Imperatriz-Fonseca
V.L., Ramos S.J., Resende-Moreira L.C., Siqueira J.O., Trevelin L.C.,
Caldeira C.F., Gastauer M., Jaffé R. 2021. Combining genotype,
phenotype, and environmental data to delineate site-adjusted provenance
strategies for ecological restoration. Molecular Ecology Resources.
21:44–58.
Chan K.O., Grismer L.L. 2022. GroupStruct: An R Package for Allometric
Size Correction. Zootaxa. 5124:471–482.
Chermock R.L. 1952. A key to the amphibians and reptiles of Alabama.
University, Ala.
Coyne J.A., Orr H.A. 2004. Speciation. Oxford, New York: Oxford
University Press.
Cutter A.D., Gray J.C. 2016. Ephemeral ecological speciation and the
latitudinal biodiversity gradient. Evolution. 70:2171–2185.
DeRaad D.A., Applewhite E.E., Tsai W.L.E., Terrill R.S., Kingston S.E.,
Braun M.J., McCormack J.E. 2022. Hybrid zone or hybrid lineage: a
genomic reevaluation of Sibley’s classic species conundrum in Pipilo
towhees. Evolution.:qpac068.
Diniz-Filho J.A.F., Soares T.N., Lima J.S., Dobrovolski R., Landeiro
V.L., de Campos Telles M.P., Rangel T.F., Bini L.M. 2013. Mantel test in
population genetics. Genet Mol Biol. 36:475–485.
Dufresnes C., Brelsford A., Jeffries D.L., Mazepa G., Suchan T.,
Canestrelli D., Nicieza A., Fumagalli L., Dubey S., Martínez-Solano I.,
Litvinchuk S.N., Vences M., Perrin N., Crochet P.-A. 2021. Mass of genes
rather than master genes underlie the genomic architecture of amphibian
speciation. PNAS. 118.
Dufresnes C., Strachinis I., Suriadna N., Mykytynets G., Cogălniceanu
D., Székely P., Vukov T., Arntzen J.W., Wielstra B., Lymberakis P.,
Geffen E., Gafny S., Kumlutaş Y., Ilgaz Ç., Candan K., Mizsei E.,
Szabolcs M., Kolenda K., Smirnov N., Géniez P., Lukanov S., Crochet
P.-A., Dubey S., Perrin N., Litvinchuk S.N., Denoël M. 2019.
Phylogeography of a cryptic speciation continuum in Eurasian spadefoot
toads (Pelobates). Molecular Ecology. 28:3257–3270.
Duminil J., Fineschi S., Hampe A., Jordano P., Salvini D., Vendramin
G.G., Petit R.J. 2007. Can Population Genetic Structure Be Predicted
from Life‐History Traits? The American Naturalist. 169:662–672.
Dynesius M., Jansson R. 2014. PERSISTENCE OF WITHIN-SPECIES LINEAGES: A
NEGLECTED CONTROL OF SPECIATION RATES. Evolution. 68:923–934.
Eaton D.A.R., Overcast I. 2020. ipyrad: Interactive assembly and
analysis of RADseq datasets. Bioinformatics. 36:2592–2594.
Elshire R.J., Glaubitz J.C., Sun Q., Poland J.A., Kawamoto K., Buckler
E.S., Mitchell S.E. 2011. A Robust, Simple Genotyping-by-Sequencing
(GBS) Approach for High Diversity Species. PLoS ONE. 6:e19379.
Ferrier S., Manion G., Elith J., Richardson K. 2007. Using generalized
dissimilarity modelling to analyse and predict patterns of beta
diversity in regional biodiversity assessment. Diversity and
Distributions. 13:252–264.
Fick S.E., Hijmans R.J. 2017. WorldClim 2: new 1-km spatial resolution
climate surfaces for global land areas. International Journal of
Climatology. 37:4302–4315.
Fitzpatrick S.W., Brasileiro C.A., Haddad C.F.B., Zamudio K.R. 2009.
Geographical variation in genetic structure of an Atlantic Coastal
Forest frog reveals regional differences in habitat stability. Molecular
Ecology. 18:2877–2896.
Fitzpatrick S.W., Gerberich J.C., Kronenberger J.A., Angeloni L.M., Funk
W.C. 2015. Locally adapted traits maintained in the face of high gene
flow. Ecology Letters. 18:37–47.
Forester B.R., Lasky J.R., Wagner H.H., Urban D.L. 2018. Comparing
methods for detecting multilocus adaptation with multivariate
genotype–environment associations. Molecular Ecology. 27:2215–2233.
Freedman A.H., Harrigan R.J., Zhen Y., Hamilton A.M., Smith T.B. 2023.
Evidence for ecotone speciation across an African rainforest-savanna
gradient. Molecular Ecology. 32:2287–2300.
Frei D., De-Kayne R., Selz O.M., Seehausen O., Feulner P.G.D. 2022.
Genomic variation from an extinct species is retained in the extant
radiation following speciation reversal. Nat Ecol Evol. 6:461–468.
Frichot E., François O. 2015. LEA: An R package for landscape and
ecological association studies. Methods in Ecology and Evolution.
6:925–929.
Frichot E., Mathieu F., Trouillon T., Bouchard G., François O. 2014.
Fast and Efficient Estimation of Individual Ancestry Coefficients.
Genetics. 196:973–983.
Garnier S., Alibert P., Audiot P., Prieur B., Rasplus J.-Y. 2004.
Isolation by distance and sharp discontinuities in gene frequencies:
implications for the phylogeography of an alpine insect species, Carabus
solieri. Molecular Ecology. 13:1883–1897.
Graham S.P., Beamer D., Lamb T. 2012. Good news at last: conservation
status of the seepage salamander (Desmognathus aeneus). Herpetological
Conservation and Biology. 7:339–348.
Gutenkunst R.N., Hernandez R.D., Williamson S.H., Bustamante C.D. 2009.
Inferring the Joint Demographic History of Multiple Populations from
Multidimensional SNP Frequency Data. PLoS Genet. 5:e1000695.
Harrison J.R. 1992. Desmognathus aeneus. Catalogue of American
Amphibians and Reptiles. 534:1–4.
Hartl D.L., Clark A.G. 2007. Principles of population genetics.
Sunderland, Mass: Sinauer Associates.
Harvey M.G., Seeholzer G.F., Smith B.T., Rabosky D.L., Cuervo A.M.,
Brumfield R.T. 2017. Positive association between population genetic
differentiation and speciation rates in New World birds. Proceedings of
the National Academy of Sciences. 114:6328–6333.
Hey J., Pinho C. 2012. Population Genetics and Objectivity in Species
Diagnosis. Evolution. 66:1413–1429.
Hijmans R.J., Phillips S., Leathwick J., Elith J., Hijmans M.R.J. 2017.
Package ‘dismo.’ Circles. 9:1–68.
Huang J.-P. 2020. Is population subdivision different from speciation?
From phylogeography to species delimitation. Ecology and Evolution.
10:6890–6896.
Huang J.-P., Knowles L.L. 2016. The Species versus Subspecies Conundrum:
Quantitative Delimitation from Integrating Multiple Data Types within a
Single Bayesian Approach in Hercules Beetles. Systematic Biology.
65:685–699.
Hutchison D.W., Templeton A.R. 1999. CORRELATION OF PAIRWISE GENETIC AND
GEOGRAPHIC DISTANCE MEASURES: INFERRING THE RELATIVE INFLUENCES OF GENE
FLOW AND DRIFT ON THE DISTRIBUTION OF GENETIC VARIABILITY. Evolution.
53:1898–1914.
Ilut D.C., Nydam M.L., Hare M.P. 2014. Defining Loci in
Restriction-Based Reduced Representation Genomic Data from Nonmodel
Species: Sources of Bias and Diagnostics for Optimal Clustering. BioMed
Research International. 2014:1–9.
Jackson N.D., Carstens B.C., Morales A.E., O’Meara B.C. 2017. Species
Delimitation with Gene Flow. Systematic Biology. 66:799–812.
Janzen D.H. 1967. Why Mountain Passes are Higher in the Tropics. The
American Naturalist. 101:233–249.
Jiao X., Flouri T., Rannala B., Yang Z. 2020. The Impact of
Cross-Species Gene Flow on Species Tree Estimation. Syst Biol.
69:830–847.
Jiao X., Yang Z. 2021. Defining Species When There is Gene Flow.
Systematic Biology. 70:108–119.
Jombart T. 2008. adegenet: a R package for the multivariate analysis of
genetic markers. Bioinformatics. 24:1403–1405.
Jombart T., Devillard S., Balloux F. 2010. Discriminant analysis of
principal components: a new method for the analysis of genetically
structured populations. BMC Genet. 11:94.
Jouganous J., Long W., Ragsdale A.P., Gravel S. 2017. Inferring the
Joint Demographic History of Multiple Populations: Beyond the Diffusion
Approximation. Genetics. 206:1549–1567.
Kearns A.M., Campana M.G., Slikas B., Berry L., Saitoh T., Cibois A.,
Fleischer R.C. 2022. Conservation genomics and systematics of a
near-extinct island radiation. Molecular Ecology. 31:1995–2012.
Kisel Y., Barraclough T.G., Donohue A.E.K., McPeek E.M.A. 2010.
Speciation Has a Spatial Scale That Depends on Levels of Gene Flow. The
American Naturalist. 175:316–334.
Kremer A., Ronce O., Robledo-Arnuncio J.J., Guillaume F., Bohrer G.,
Nathan R., Bridle J.R., Gomulkiewicz R., Klein E.K., Ritland K.,
Kuparinen A., Gerber S., Schueler S. 2012. Long-distance gene flow and
adaptation of forest trees to rapid climate change. Ecology Letters.
15:378–392.
Ledbetter N.M., Bonett R.M. 2019. Terrestriality constrains salamander
limb diversification: Implications for the evolution of pentadactyly.
Journal of Evolutionary Biology. 32:642–652.
Leffler E.M., Bullaughey K., Matute D.R., Meyer W.K., Ségurel L., Venkat
A., Andolfatto P., Przeworski M. 2012. Revisiting an Old Riddle: What
Determines Genetic Diversity Levels within Species? PLOS Biology.
10:e1001388.
Linck E., Battey C.J. 2019. Minor allele frequency thresholds strongly
affect population structure inference with genomic data sets. Molecular
Ecology Resources. 19:639–647.
Liu C., Newell G., White M. 2015. On the selection of thresholds for
predicting species occurrence with presence‐only data. Ecol Evol.
6:337–348.
MacLachlan G., Hurlburt J., Suarez M., Wong K.L., Burke W., Lewis T.,
Gallo A., Flidr J., Gabiam R., Nicholas J., Ensor B. 2020. Building a
Shared Resource HPC Center Across University Schools and Institutes: A
Case Study. arXiv:2003.13629 [cs].
Maier P.A., Vandergast A.G., Ostoja S.M., Aguilar A., Bohonak A.J. 2019.
Pleistocene glacial cycles drove lineage diversification and fusion in
the Yosemite toad (Anaxyrus canorus). Evolution. 73:2476–2496.
McCartney‐Melstad E., Gidiş M., Shaffer H.B. 2019. An empirical pipeline
for choosing the optimal clustering threshold in RADseq studies. Mol
Ecol Resour. 19:1195–1204.
Mills L.S., Allendorf F.W. 1996. The One-Migrant-per-Generation Rule in
Conservation and Management. Conservation Biology. 10:1509–1518.
Miranda R.B. de, Brandão R.A., O’Connell K.A., Colli G.R., Tonini
J.F.R., Pyron R.A. 2023. Multilocus environmental adaptation and
population structure in populations of the Cerrado gecko Gymnodactylus
amarali (Sauria, Phyllodactylidae) from Serra da Mesa Hydroelectric
Plant, Central Brazil. Frontiers in Ecology and Evolution. in press.
Mokany K., Ware C., Woolley S.N.C., Ferrier S., Fitzpatrick M.C. 2022. A
working guide to harnessing generalized dissimilarity modelling for
biodiversity analysis and conservation assessment. Global Ecology and
Biogeography. 31:802–821.
Moreno-Contreras I., Llanes-Quevedo A., Sánchez-González L.A., Arizmendi
M.D.C., Navarro-Sigüenza A.G. 2023. Isolation by resistance explains
genetic diversity in the Arremon brushfinches of northern Mesoamerica.
Mol Ecol. 32:3450–3470.
Muñoz M.M., Bodensteiner B.L. 2019. Janzen’s Hypothesis Meets the Bogert
Effect: Connecting Climate Variation, Thermoregulatory Behavior, and
Rates of Physiological Evolution. Integrative Organismal Biology.
1:oby002.
Nali R.C., Becker C.G., Zamudio K.R., Prado C.P.A. 2020. Topography,
more than land cover, explains genetic diversity in a Neotropical
savanna tree frog. Diversity and Distributions. 26:1798–1812.
Nosil P., Egan S.P., Funk D.J. 2008. Heterogeneous Genomic
Differentiation between Walking-Stick Ecotypes: “Isolation by
Adaptation” and Multiple Roles for Divergent Selection. Evolution.
62:316–336.
Nosil P., Harmon L.J., Seehausen O. 2009. Ecological explanations for
(incomplete) speciation. Trends Ecol Evol. 24:145–156.
Noskova E., Abramov N., Iliutkin S., Sidorin A., Dobrynin P., Ulyantsev
V. 2023. GADMA2: more efficient and flexible demographic inference from
genetic data. :2022.06.14.496083.
Noskova E., Ulyantsev V., Koepfli K.-P., O’Brien S.J., Dobrynin P. 2020.
GADMA: Genetic algorithm for inferring demographic history of multiple
populations from allele frequency spectrum data. GigaScience. 9:giaa005.
O’Connell K.A., Prates I., Scheinberg L.A., Mulder K.P., Bell R.C. 2021.
Speciation and secondary contact in a fossorial island endemic, the São
Tomé caecilian. Molecular Ecology. 30:2859–2871.
Omernik J.M., Griffith G.E. 2014. Ecoregions of the Conterminous United
States: Evolution of a Hierarchical Spatial Framework. Environmental
Management. 54:1249–1266.
Onn C., Grismer L. 2021. A standardized and statistically defensible
framework for quantitative morphological analyses in taxonomic studies.
Zootaxa. 5023:293–300.
Orsini L., Vanoverbeke J., Swillen I., Mergeay J., De Meester L. 2013.
Drivers of population genetic differentiation in the wild: isolation by
dispersal limitation, isolation by adaptation and isolation by
colonization. Molecular Ecology. 22:5983–5999.
Palumbi S.R., Grabowsky G., Duda T., Geyer L., Tachino N. 1997.
SPECIATION AND POPULATION GENETIC STRUCTURE IN TROPICAL PACIFIC SEA
URCHINS. Evolution. 51:1506–1517.
Pardo-Diaz C., Salazar C., Baxter S.W., Merot C., Figueiredo-Ready W.,
Joron M., McMillan W.O., Jiggins C.D. 2012. Adaptive Introgression
across Species Boundaries in Heliconius Butterflies. PLOS Genetics.
8:e1002752.
Petkova D., Novembre J., Stephens M. 2016. Visualizing spatial
population structure with estimated effective migration surfaces. Nat
Genet. 48:94–100.
Postma E., van Noordwijk A.J. 2005. Gene flow maintains a large genetic
difference in clutch size at a small spatial scale. Nature. 433:65–68.
Prates I., Hutchinson M.N., Singhal S., Moritz C., Rabosky D.L. 2023.
Notes from the taxonomic disaster zone: Evolutionary drivers of
intractable species boundaries in an Australian lizard clade (Scincidae:Ctenotus ). Molecular Ecology.:mec.17074.
Pyron R.A., Beamer D.A. 2023. Systematic revision of the Spotted and
Northern Dusky Salamanders (Plethodontidae: Desmognathus conanti and D.
fuscus), with six new species from the eastern United States. Zootaxa.
5311:451–504.
Pyron R.A., O’Connell K.A., Duncan S.C., Burbrink F.T., Beamer D.A.
2023. Speciation Hypotheses from Phylogeographic Delimitation Yield an
Integrative Taxonomy for Seal Salamanders ( Desmognathus
monticola ). Systematic Biology. 72:179–197.
Pyron R.A., O’Connell K.A., Lemmon E.M., Lemmon A.R., Beamer D.A. 2020.
Phylogenomic data reveal reticulation and incongruence among
mitochondrial candidate species in Dusky Salamanders (Desmognathus).
Molecular Phylogenetics and Evolution. 146:106751.
Pyron R.A., O’Connell K.A., Lemmon E.M., Lemmon A.R., Beamer D.A. 2022.
Candidate‐species delimitation in Desmognathus salamanders reveals gene
flow across lineage boundaries, confounding phylogenetic estimation and
clarifying hybrid zones. Ecology and Evolution. 12:e8574.
Rissler L.J., Hijmans R.J., Graham C.H., Moritz C., Wake D.B. 2006.
Phylogeographic Lineages and Species Comparisons in Conservation
Analyses: A Case Study of California Herpetofauna. The American
Naturalist. 167:655–666.
Rosenblum E.B., Sarver B.A.J., Brown J.W., Des Roches S., Hardwick K.M.,
Hether T.D., Eastman J.M., Pennell M.W., Harmon L.J. 2012. Goldilocks
Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of
Diversification Across Time Scales. Evol Biol. 39:255–261.
Rousset F. 1997. Genetic Differentiation and Estimation of Gene Flow
from F-Statistics Under Isolation by Distance. Genetics. 145:1219–1228.
Roux C., Fraïsse C., Romiguier J., Anciaux Y., Galtier N., Bierne N.
2016. Shedding Light on the Grey Zone of Speciation along a Continuum of
Genomic Divergence. PLOS Biology. 14:e2000234.
Schield D.R., Perry B.W., Adams R.H., Card D.C., Jezkova T., Pasquesi
G.I.M., Nikolakis Z.L., Row K., Meik J.M., Smith C.F., Mackessy S.P.,
Castoe T.A. 2019. Allopatric divergence and secondary contact with gene
flow: a recurring theme in rattlesnake speciation. Biological Journal of
the Linnean Society. 128:149–169.
Seeholzer G.F., Brumfield R.T. 2018. Isolation by distance, not
incipient ecological speciation, explains genetic differentiation in an
Andean songbird (Aves: Furnariidae: Cranioleuca antisiensis,Line‐cheeked Spinetail) despite near threefold body size change across
an environmental gradient. Mol Ecol. 27:279–296.
Sexton J.P., Hangartner S.B., Hoffmann A.A. 2014. Genetic Isolation by
Environment or Distance: Which Pattern of Gene Flow Is Most Common?
Evolution. 68:1–15.
Singhal S., Colli G.R., Grundler M.R., Costa G.C., Prates I., Rabosky
D.L. 2022. No link between population isolation and speciation rate in
squamate reptiles. PNAS. 119.
Singhal S., Hoskin C.J., Couper P., Potter S., Moritz C. 2018a. A
Framework for Resolving Cryptic Species: A Case Study from the Lizards
of the Australian Wet Tropics. Systematic Biology. 67:1061–1075.
Singhal S., Huang H., Grundler M.R., Marchán-Rivadeneira M.R., Holmes
I., Title P.O., Donnellan S.C., Rabosky D.L. 2018b. Does Population
Structure Predict the Rate of Speciation? A Comparative Test across
Australia’s Most Diverse Vertebrate Radiation. The American Naturalist.
192:432–447.
Singhal S., Moritz C. 2013. Reproductive isolation between
phylogeographic lineages scales with divergence. Proc Biol Sci.
280:20132246.
Slatkin M. 1987. Gene Flow and the Geographic Structure of Natural
Populations. Science. 236:787–792.
Slatkin M. 1993. Isolation by Distance in Equilibrium and
Non-Equilibrium Populations. Evolution. 47:264–279.
Smadja C.M., Butlin R.K. 2011. A framework for comparing processes of
speciation in the presence of gene flow. Molecular Ecology.
20:5123–5140.
Smith M.L., Carstens B.C. 2020. Process-based species delimitation leads
to identification of more biologically relevant species. Evolution.
74:216–229.
Soltis D.E., Morris A.B., McLACHLAN J.S., Manos P.S., Soltis P.S. 2006.
Comparative phylogeography of unglaciated eastern North America.
Molecular Ecology. 15:4261–4293.
Stankowski S., Ravinet M. 2021. Defining the speciation continuum.
Evolution. 75:1256–1273.
van Strien M.J., Holderegger R., Van Heck H.J. 2015.
Isolation-by-distance in landscapes: considerations for landscape
genetics. Heredity. 114:27–37.
Sukumaran J., Knowles L.L. 2017. Multispecies coalescent delimits
structure, not species. Proc Natl Acad Sci USA. 114:1607–1612.
Title P.O., Bemmels J.B. 2018. ENVIREM: an expanded set of bioclimatic
and topographic variables increases flexibility and improves performance
of ecological niche modeling. Ecography. 41:291–307.
Twyford A.D., Wong E.L.Y., Friedman J. 2020. Multi-level patterns of
genetic structure and isolation by distance in the widespread plant
Mimulus guttatus. Heredity (Edinb). 125:227–239.
Valette T., Leitwein M., Lascaux J.-M., Desmarais E., Berrebi P.,
Guinand B. 2023. Redundancy analysis, genome-wide association studies
and the pigmentation of brown trout (Salmo trutta L.). J Fish Biol.
102:96–118.
Velo-Antón G., Parra J.L., Parra-Olea G., Zamudio K.R. 2013. Tracking
climate change in a dispersal-limited species: reduced spatial and
genetic connectivity in a montane salamander. Molecular Ecology.
22:3261–3278.
Wang I.J., Bradburd G.S. 2014. Isolation by environment. Mol Ecol.
23:5649–5662.
Weir B.S., Cockerham C.C. 1984. Estimating F-Statistics for the Analysis
of Population Structure. Evolution. 38:1358–1370.
Wishingrad V., Thomson R.C. 2023. Temperate Zone Isolation by Climate:
An Extension of Janzen’s 1967 Hypothesis. The American Naturalist.
201:302–314.
Wright S. 1931. Evolution in Mendelian Populations. Genetics.
16:97–159.
Yang L., Kong H., Huang J.-P., Kang M. 2019. Different species or
genetically divergent populations? Integrative species delimitation of
the Primulina hochiensis complex from isolated karst habitats. Molecular
Phylogenetics and Evolution. 132:219–231.
Zamudio K.R., Bell R.C., Mason N.A. 2016. Phenotypes in phylogeography:
Species’ traits, environmental variation, and vertebrate
diversification. Proc Natl Acad Sci USA. 113:8041–8048.
Zbinden Z.D., Douglas M.R., Chafin T.K., Douglas M.E. 2022. Riverscape
community genomics: A comparative analytical approach to identify common
drivers of spatial structure. Mol Ecol.
Zhang M., Suren H., Holliday J.A. 2019. Phenotypic and Genomic Local
Adaptation across Latitude and Altitude in Populus trichocarpa. Genome
Biology and Evolution. 11:2256–2272.