REFERENCES
Baker, A.J. & Marshall, H.D. (1997) Mitochondrial control region sequences as tools for understanding evolution. In Avian molecular evolution and systematics , 51-83.
Bichuette, M. & Trajano E. (2010) Conservation of subterranean fishes.New Hampshire , USA: Science publishers , 65-80.
Burridge, C.P., Craw, D. & Waters, J.M. (2007) An empirical test of freshwater vicariance via river capture. Molecular Ecology , 16, 1883-1895.
Camacho, A.I. (1992) The Natural History of Biospeology. Monographs of the National Museum of Natural Sciences. National Museum of Natural Sciences , Madrid.
Che, J., Zhou, W.W., Hu, J.S., Yan, F., Papenfuss, T.J., Wake, D.B. & Zhang, Y.P. (2010) Spiny frogs (Paini ) illuminate the history of the Himalayan region and Southeast Asia. Proceedings of the National Academy of Sciences , 107, 13765-70.
Chen, S.Y., Zhang, R.D., Feng, J.G., Xiao, H., Li, W.X., Zan, R.G. & Zhang Y.P. (2009) Exploring factors shaping population genetic structure of the freshwater fish Sinocyclocheilus graham (Teleostei: Cyprinidae). Journal of Fish Biology , 74: 1774-1786.
Chu, X.L. & Chen, Y.R. (1989) The Biological Characteristics of Fish Fauna in Yunnan Plateau Lakes and the Ways of Fishery Utilization.Resource development and protection , 5(1): 6. [in Chinese]
Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A., et al. (2011) The variant call format and VCFtools.Bioinformatics , 27(15): 2156-2158.
Deng, T., Wu, F., Zhou, Z. & Su, T. (2020) Tibetan Plateau: An evolutionary junction for the history of modern biodiversity.Science China Earth Sciences , 63, 172-87.
Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution , 29, 1969-73.
Eggers, J.J., Bauml, R., Tzschoppe, R. & Girod, B. (2003) Scalar costa scheme for information embedding. Signal Processing IEEE Transactions on , 51(4), 1003-1019.
Guo, P., Liu, Q., Zhu, F., Zhong, G.H., Che, J., Wang, P., et al. (2019) Multilocus phylogeography of the brown-spotted pitviper Protobothrops mucrosquamatus (Reptilia: Serpentes: Viperidae) sheds a new light on the diversification pattern in Asia. Molecular phylogenetics and Evolution , 133, 82-91.
Gutierrez, E.E. & Helgen, K.M. (2013) Mammalogy: outdated taxonomy blocks conservation. Nature , 495: 314.
Jiang, W.S., Li, J., Lei, X.Z., Wen, Z.R., Han, Y.Z., Yang, J.X., et al. (2019) Sinocyclocheilus sanxiaensis , a new blind fish from the Three Gorges of Yangtze River provides insights into speciation of Chinese cavefish. Zoological Research , 40, 552-7.
Kvist, L., Ruokonen, M., Lumme, J. & Orell, M. (1999) The colocisation history and present clay colonization structure of the European great tit (Parus major). Heredity , 82: 495-502.
Leonard, J.A., Wayne, R.K. & Cooper, A. (2000) Population Genetics of Ice Age Brown Bears. Proceedings of the National Academy of Sciences of the United States of America , 97: 1651-1654.
Li, H. & Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics , 25(14): 1754-1760.
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009) The sequence alignment/map format and SAMtools.Bioinformatics , 25 (16): 2078-2079.
Li, J. & Fang, X. (1999) Uplift of the Tibetan Plateau and environmental changes. Chinese Science Bulletin , 44(23): 2117-24.
Li, S.H., Yu, M.J., Li, G.Z., Zeng, J.J., Chen, J.Y., Gao, B.Y., et al. (1963) Survey of Yunnan Plateau Lakes. Oceanologia Et Limnologia Sinica , (02): 87-114. [in Chinese]
Li, W.X. (2001) The distribution of surviving Sinocyclocheilus grahami and other endemic fishes in Dianchi Lake valley. Journal of Jishou University (Natural Science Edition) , 22, 72-74. [in Chinese]
Mao, T., Liu, Y., Vasconcellos, M.M., Pie, M.R., Ellepola, G., Fu, C., et al. (2021) Evolving in the darkness: phylogenomics ofSinocyclocheilus cavefishes highlights recent diversification and cryptic diversity. Molecular Phylogenetics and Evolution , 168, 107400.
Merila, Bjorklund, M. & Baker, A.J. (1997) Historical demography and present daypopulation structure of the greenfinc~Carduelis chloris-an analysis of mtDNA control-region sequences. Evolution , 51: 946-956.
Poissant, J., Knight, T.W. & Ferguson, M.M. (2005) None quilibrium conditions following landscape rearrangement: the relative contribution of past and current hydrological landscapes on the genetic structure of a stream-dwelling fish. Molecular Ecology , 14, 1321-1331.
Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7.Systematic Biology , 67, 901-4.
Regan, C.T. (1904) On a collection of fishes made by Mr. John Grahamat Yunnan Fu. Annals & Magazine of Natural History , 13(7): 190.
Ryder, O.A. (1986) Species conservation and the dilemma of subspecies.Trends in Ecology and Evolution 1, 9-10.
Shi, Y.F., Li, J.J., Li, B.Y., Yao, T.D. & Zhang, Q.S. (1999) Uplift of the Qinghai-Xizang (Tibetan) plateau and east Asia environmental change during late Cenozoic. Acta Geogr Sin , 54(1): 10-20.
Shu, S.S., Jiang, W.S., Whitten, T., Yang, J.X. & Chen, X.Y. (2013) Drought And China’s Cave Species. Science , 340(6130): 272.
Wen, H., Luo, T. & Wang, Y. (2022) Molecular phylogeny and historical biogeography of the cave fish genus Sinocyclocheilus(Cypriniformes: Cyprinidae) in southwest China. Integrative zoology , (2): 17.
Xiang, K.L., Erst, A.S., Yang, J., Peng, H.W. & Wang, W. (2021) Biogeographic diversification of Eranthis (Ranunculaceae) reflects the geological history of the three great Asian plateaus.Proceedings of the Royal Society B , 288, 20210281.
Xiao, H., Li, W.X. & Zan, R.G. (2004) Three new species of the genusSinocyclocheilus from Kunming. Southwest Agricultural Journal , 17 (4): 521-521. [in Chinese]
Yang, L.F. (1984) A Preliminary Study on the Genetic Types and Distribution Patterns of Lakes in Yunnan Plateau. Ocean Lake and Marsh Bulletin , (01): 36-41. [in Chinese]
Yang, J.X., Chen, X.L., Bai, J., Dong, M.F., Qiu, Y., Jiang, W.H., et al. (2016) The Sinocyclocheilus cavefish genome provides insights into cave adaptation. BMC Biology , 14, 1.
Yang, N., Li, Y.W., Liu, Z.H., Chen, Q.L. & Shen Y.J. (2021) Molecular phylogenetics and evolutionary history of Sinocyclocheilus(Cypriniformes: Cyprinidae) species within Barbinae in China.Environmental Biology of Fishes , 104: 1149-1162.
Yue, P.Q. & Chen, Y.Y. (1998) China Red Data Book of Endangered Animals: Fish. Beijing: Science Press . [in Chinese]
Zachos, F.E. (2013) Taxonomy: species splitting puts conservation at risk. Nature , 494: 35.
Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press , 626 pp.
Zhang, Y.L., Dang, Y. & He P.A. (2005) Quantitative analysis of biological relationships using Pearson correlation coefficient.Computer engineering and Application , 41(33), 5. [in Chinese]
Zhao, Y.H. & Zhang, C.G. (2009) Endemic Fishes ofSinocyclocheilus (Cypriniformes: Cyprinidae) in China-Species Diversity, Cave Adaptation, Systematics and Zoogeography. Science Press, Beijing , China.
Zhao, Z. & Li S. (2017) Extinction vs. rapid radiation: The juxtaposed evolutionary histories of coelotine spiders support the Eocene-Oligocene orogenesis of the Tibetan Plateau. Systematic Biology , 66, 988-1006.
Zhu, H.H. (1991) The Formation of Yunnan Faulted Lakes and the Sedimentation and Evolution of the Late Cenozoic. Oceans and Lakes , 22(6), 8. [in Chinese]
Zink, R.M. (1997) Phylogeographic studies of North American birds. In: Mindell, D.P. (Eds.) Avian Molecular Evolution and Systematics.San Diego: Academic Press , 301-324.