Comparative genomics of PEK locus between B.
nigra, A. thaliana and B. rapa
Synteny analysis between the B. nigra PEK locus, A.
thaliana and B. rapa genomes was performed using the tool SynMap
on the CoGe web platform (Haug-Baltzell, Stephens, Davey, Scheidegger,
& Lyons, 2017; Lyons et al., 2008). SynMap legacy version was used with
similar settings as previously described (Bassetti, 2022). All genomes
were accessed in September 2021 from the following databases: B.
nigra genomes NI100 v2.0 and C2 v1.0 were downloaded from
http://cruciferseq.ca/, genome Sangam v1.0 from
http://brassicadb.cn/, B. rapa genome Chiifu v3 from
http://brassicadb.cn/, A. thaliana Col-0 vTAIR10 from
https://www.arabidopsis.org/.