SUPPORTING INFORMATION
Supporting information is available as submitted.
LITERATURE CITED
Alström, P., U. Olsson, and F. Lei (2013). A review of the recent advances in the systematics of the avian superfamily Sylvioidea. Chinese Birds 4:99–131.
Alström, P., F. E. Rheindt, R. Zhang, M. Zhao, J. Wang, X. Zhu, C. Y. Gwee, Y. Hao, J. Ohlson, C. Jia, D. M. Prawiradilaga, et al. (2018). Complete species-level phylogeny of the leaf warbler (Aves: Phylloscopidae) radiation. Molecular Phylogenetics and Evolution 126:141–152.
Baker, A. M., P. B. Mather, and J. M. Hughes (2001). Evidence for long-distance dispersal in a sedentary passerine, Gymnorhina tibicen (Artamidae). Biological Journal of the Linnean Society 72:333–343.
Ballard, J. W. O., and M. C. Whitlock (2004). The incomplete natural history of mitochondria. Molecular Ecology 13:729–744.
Burney, CW, Brumfield, RT (2009) Ecology predicts levels of genetic differentiation in Neotropical birds. American Naturalist 174:358-368.
Cai, T, Cibois, A, Alström, P, Moyle, RG, Kennedy, JD, Shao, S, Zhang, R, Irestedt, M, Ericson, PG, Gelang, M (2019) Near-complete phylogeny and taxonomic revision of the world’s babblers (Aves: Passeriformes). Molecular Phylogenetics and Evolution 130:346-356.
Cai, T., S. Shao, J. D. Kennedy, P. Alström, R. G. Moyle, Y. Qu, F. Lei, and J. Fjeldså (2020). The role of evolutionary time, diversification rates and dispersal in determining the global diversity of a large radiation of passerine birds. Journal of Biogeography 47:1612–1625.
Céspedes Arias, L. N., S. Wilson, and N. J. Bayly (2022). Community modeling reveals the importance of elevation and land cover in shaping migratory bird abundance in the Andes. Ecological Applications 32.
Chaves, J. A., J. T. Weir, and T. B. Smith (2011). Diversification in Adelomyia hummingbirds follows Andean uplift. Molecular Ecology 20:4564–4576.
Chen, J.-M., W.-W. Zhou, N. A. Poyarkov, B. L. Stuart, R. M. Brown, A. Lathrop, Y.-Y. Wang, Z.-Y. Yuan, K. Jiang, M. Hou, H.-M. Chen, et al. (2017). A novel multilocus phylogenetic estimation reveals unrecognized diversity in Asian horned toads, genus Megophrys sensu lato (Anura: Megophryidae). Molecular Phylogenetics and Evolution 106:28–43.
Chen, P., R. Hua, B. Zhang, J. Lu, and C. Fan (2002). Early Yanshanian post-orogenic granitoids in the Nanling region - Petrological constraints and geodynamic settings. Science in China, Series D: Earth Sciences 45:755–768.
Cheng, T., and Y. Chang (1956). On tentative scheme for dividing zoogeographical regions of China. Acta Geologica Sinica 22:93.
Collar, N. and C. Robson (2021a). Greater Necklaced Laughingthrush (Pterorhinus pectoralis ), version 1.1. In Birds of the World (J. del Hoyo, A. Elliott, J. Sargatal, D. A. Christie, and E. de Juana, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.gnlthr.01.1
Collar, N. and C. Robson (2021b). Indochinese Yuhina (Staphida torqueola ), version 1.1. In Birds of the World (J. del Hoyo, A. Elliott, J. Sargatal, D. A. Christie, and E. de Juana, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.indyuh1.01.1
Cruickshank, T. E., and M. W. Hahn (2014). Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Molecular Ecology 23:3133–3157.
Danielson, J. J., and D. B. Gesch (2011). Global multi-resolution terrain elevation data 2010 (GMTED2010). OFR 2011–1073.
Develey, P. F., and P. C. Stouffer (2008). Effects of roads on movements by understory birds in mixed-species flocks in central Amazonian Brazil. Conservation Biology 15:1416–1422.
Dong, F., C. M. Hung, X. L. Li, J. Y. Gao, Q. Zhang, F. Wu, F. M. Lei, S. H. Li, and X. J. Yang (2017). Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna. BMC evolutionary biology 17:244.
Van Etten, J. (2017). R Package gdistance : Distances and Routes on Geographical Grids. Journal of Statistical Software 76.
Ezard, T., T Fujisawa,T. Barraclough (2021). splits: SPecies’ LImits by Threshold Statistics. R package version 1.0-20/r56, <https://R-Forge.R-project.org/projects/splits/>.
Fishpool, L. and J. Tobias (2020). Mountain Bulbul (Ixos mcclellandii ), version 1.0. In Birds of the World (J. del Hoyo, A. Elliott, J. Sargatal, D. A. Christie, and E. de Juana, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.moubul2.01.
Gill, F, D Donsker, and P Rasmussen (Eds). 2021. IOC World Bird List (v 11.1). Doi 10.14344/IOC.ML.11.1. http://www.worldbirdnames.org/
Guo, Z. T., B. Sun, Z. S. Zhang, S. Z. Peng, G. Q. Xiao, J. Y. Ge, Q. Z. Hao, Y. S. Qiao, M. Y. Liang, J. F. Liu, Q. Z. Yin, and J. J. Wei (2008). A major reorganization of Asian climate by the early Miocene. Climate of the Past 4:153–174.
Hazzi, N. A., J. S. Moreno, C. Ortiz-Movliav, and R. D. Palacio (2018). Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes. Proceedings of the National Academy of Sciences of the United States of America 115:7985–7990.
Hijmans, Robert J. (2019). raster: Geographic Data Analysis and Modeling. R package version 2.9-23.
Hoorn, C., A. Perrigo, and A. Antonelli (2018). Mountains, climate and biodiversity. Wiley-Blackwell.
Van Houtan, K. S., S. L. Pimm, J. M. Halley, R. O. Bierregaard, and T. E. Lovejoy (2007). Dispersal of Amazonian birds in continuous and fragmented forest. Ecology Letters 10:219–229.
Hu, Y., H. Fan, Y. Chen, J. Chang, X. Zhan, H. Wu, B. Zhang, M. Wang, W. Zhang, L. Yang, X. Hou, X. Shen, T. Pan, W. Wu, J. Li, H. Hu, F. Wei,. (2021). Spatial patterns and conservation of genetic and phylogenetic diversity of wildlife in China. Science Advances 7:1–10.
Hubble, S. P. (2001). The unified neutral theory of biodiversity and biogeography. Princeton University Press.
Jacques, F. M. B., G. Shi, and W. Wang (2011). Reconstruction of Neogene zonal vegetation in South China using the Integrated Plant Record (IPR) analysis. Palaeogeography, Palaeoclimatology, Palaeoecology 307:272–284.
Janzen, D. H. (1967). Why mountain passes are higher in the tropics. The American Naturalist 101:233–249.
Jukes, T. H., and C. R. Cantor (1969). Evolution of Protein Molecules. In Mammalian Protein Metabolism. Elsevier, pp. 21–132.
Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler (2017). Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4:170122.
Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler (2018). Data from: Climatologies at high resolution for the earth’s land surface areas. Dryad Digital Repository. http://dx.doi.org/doi:10.5061/dryad.kd1d4
Karney, C. F. F. (2011). Geodesics on an ellipsoid of revolution. https://arxiv.org/abs/1102.1215.
Kirwan, G. M., N. Collar, C. Robson, and D. A. Christie (2021). Huet’s Fulvetta (Alcippe hueti ), version 2.0. In Birds of the World (B. K. Keeney, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.gycful5.02
Körner, C., W. Jetz, J. Paulsen, D. Payne, K. Rudmann-Maurer, and E. M. Spehn (2017). A global inventory of mountains for bio-geographical applications. Alpine Botany 127:1–15.
Kumar, S., G. Stecher, M. Li, C. Knyaz, and K. Tamura (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution 35:1547–1549.
Kumar, S., G. Stecher, M. Suleski, and S. B. Hedges (2017). TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. Molecular Biology and Evolution 34:1812–1819.
Lambeck, K., H. Rouby, A. Purcell, Y. Sun, and M. Sambridge (2014). Sea level and global ice volumes from the Last Glacial Maximum to the Holocene. Proceedings of the National Academy of Sciences of the United States of America 111:15296–15303.
Laurance, S. G. W. (2004). Responses of understory rain forest birds to road edges in central Amazonia. Ecological Applications 14:1344–1357.
Li, J., Y. Zhang, S. Dong, and S. T. Johnston (2014). Cretaceous tectonic evolution of South China: A preliminary synthesis. Earth-Science Reviews 134:98–136.
López-Pujol, J., F.-M. Zhang, H.-Q. Sun, T.-S. Ying, and S. Ge (2011a). Mountains of southern China as “Plant Museums” and “Plant Cradles”: Evolutionary and conservation insights. Mountain Research and Development 31:261–269.
López-Pujol, J., F. M. Zhang, H. Q. Sun, T. S. Ying, and S. Ge (2011b). Centres of plant endemism in China: Places for survival or for speciation? Journal of Biogeography 38:1267–1280.
Lynch, M., B. Koskella, and S. Schaack (2006). Mutation Pressure and the Evolution of Organelle Genomic Architecture. Science 311:1727–1730.
Male, T. D., S. G. Fancy, and C. J. Ralph (2020). Red-billed Leiothrix (Leiothrix lutea), version 1.0. In Birds of the World (S. M. Billerman, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.reblei.01
Manni, F., E. Guerard, and E. Heyer (2004). Geographic patterns of (genetic, morphologic, linguistic) variation: How barriers can be detected by using Monmonier’s algorithm. Human Biology 76:173–190.
Mayr, G. (2013). The age of the crown group of passerine birds and its evolutionary significance - Molecular calibrations versus the fossil record. Systematics and Biodiversity 11:7–13.
Mi, X., G. Feng, Y. Hu, J. Zhang, L. Chen, R. T. Corlett, A. C. Hughes, S. Pimm, B. Schmid, S. Shi, J.-C. Svenning, and K. Ma (2021). The global significance of biodiversity science in China: an overview. National Science Review. https://doi.org/10.1093/nsr/nwab032
Moore, R. P., W. D. Robinson, I. J. Lovette, and T. R. Robinson (2008). Experimental evidence for extreme dispersal limitation in tropical forest birds. Ecology Letters 11:960–968.
Nei, M., and J. C. Miller (1990). A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data. Genetics 125:873–879.
Nguyen, J. M. T., and S. Y. W. Ho (2016). Mitochondrial rate variation among lineages of passerine birds. Journal of Avian Biology 47:690–696.
Nieto Feliner, G. (2014). Patterns and processes in plant phylogeography in the Mediterranean Basin. A review. Perspectives in Plant Ecology, Evolution and Systematics 16:265–278.
Nosil, P., T. H. Vines, and D. J. Funk (2005). Perspective: Reproductive isolation caused by natural selection against immigration from divergent habitats. Evolution 59:705–719.
Oksanen, A. J., F. G. Blanchet, M. Friendly, R. Kindt, P. Legendre, D. Mcglinn, P. R. Minchin, R. B. O. Hara, G. L. Simpson, P. Solymos, M. H. H. Stevens, and E. Szoecs (2019). Vegan. Encyclopedia of Food and Agricultural Ethics:2395–2396.
Oliveros, C. H., D. J. Field, D. T. Ksepka, F. Keith Barker, A. Aleixo, M. J. Andersen, P. Alström, B. W. Benz, E. L. Braun, M. J. Braun, G. A. Bravo, et al. (2019). Earth history and the passerine superradiation. Proceedings of the National Academy of Sciences of the United States of America 116:7916–7925.
Päckert, M., J. Martens, Y.-H. Sun, L. L. Severinghaus, A. A. Nazarenko, J. Ting, T. Töpfer, and D. T. Tietze (2012). Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes). Journal of Biogeography 39:556–573.
Phillips, S. J., R. P. Anderson, and R. E. Schapire (2006). Maximum entropy modeling of species geographic distributions. Ecological Modelling 190:231–259.
Polzin, T., and S. V. Daneshmand (2003). On Steiner trees and minimum spanning trees in hypergraphs. Operations Research Letters 31:12–20.
Qu, Y., G. Song, B. Gao, Q. Quan, P. G. P. Ericson, and F. Lei (2015). The influence of geological events on the endemism of East Asian birds studied through comparative phylogeography. Journal of Biogeography 42:179–192.
R Core Team (2020). R: A language and environment for statistical computing.
Ramos, R., G. Song, J. Navarro, R. Zhang, C. T. Symes, M. G. Forero, and F. Lei (2016). Population genetic structure and long-distance dispersal of a recently expanding migratory bird. Molecular Phylogenetics and Evolution 99:194–203.
Rahbek, C., M. K. Borregaard, A. Antonelli, R. K. Colwell, B. G. Holt, D. Nogues-Bravo, C. M. Ø. Rasmussen, K. Richardson, M. T. Rosing, R. J. Whittaker, and J. Fjeldså (2019a). Building mountain biodiversity: Geological and evolutionary processes. Science 365:1114–1119.
Rahbek, C., M. K. Borregaard, R. K. Colwell, B. Dalsgaard, B. G. Holt, N. Morueta-Holme, D. Nogues-Bravo, R. J. Whittaker, and J. Fjeldså (2019b). Humboldt’s enigma: What causes global patterns of mountain biodiversity? Science 365:1108–1113.
Rozas, J., A. Ferrer-Mata, J. C. Sánchez-DelBarrio, S. Guirao-Rico, P. Librado, S. E. Ramos-Onsins, and A. Sánchez-Gracia (2017). DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. Molecular Biology and Evolution 34:3299–3302.
Sangster, G., P. Alström, E. Forsmark, and U. Olsson (2010). Multi-locus phylogenetic analysis of Old World chats and flycatchers reveals extensive paraphyly at family, subfamily and genus level (Aves: Muscicapidae). Molecular Phylogenetics and Evolution 57:380–392.
Sheldon, FH, Lim, HC, Moyle, RG (2015) Return to the Malay Archipelago: the biogeography of Sundaic rainforest birds. Journal of Ornithology 156 (Supplement 1):S91–S113.
Siddall, M., E. J. Rohling, A. Almogi-Labin, C. Hemleben, D. Meischner, I. Schmelzer, and D. A. Smeed (2003). Sea-level fluctuations during the last glacial cycle. Nature 423:853–858.
Soininen, J., R. McDonald, and H. Hillebrand (2007). The distance decay of similarity in ecological communities. Ecography 30:3–12.
Song, G., Y. Qu, Z. Yin, S. Li, N. Liu, and F. Lei (2009). Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): Long population history beyond late Pleistocene glaciations. BMC Evolutionary Biology 9:1–11.
Spehn, E., K. Rudmann-Maurer, C. Körner, and D. Maselli (2010). Mountain biodiversity and global change. Global Mountain Biodiversity Assessment (GMBA) of DIVERSITAS, Basel.
Spellman, G. M., and J. Klicka (2006). Testing hypotheses of Pleistocene population history using coalescent simulations: Phylogeography of the pygmy nuthatch (Sitta pygmaea). Proceedings of the Royal Society B: Biological Sciences 273:3057–3063.
Stratford, J. A., and W. D. Robinson (2005). Distribution of neotropical migratory bird species across an urbanizing landscape. Urban Ecosystems 8:59–77.
Strimas-Mackey, M., W.M. Hochachka, V. Ruiz-Gutierrez, O.J. Robinson, E.T. Miller, T. Auer, S. Kelling, D. Fink, A. Johnston. 2020. Best Practices for Using eBird Data. Version 1.0. https://cornelllabofornithology.github.io/ebird-best-practices/. Cornell Lab of Ornithology, Ithaca, New York. https://doi.org/10.5281/zenodo.3620739
Sullivan, B. L., C. L. Wood, M. J. Iliff, R. E. Bonney, D. Fink, and S. Kelling (2009). eBird: A citizen-based bird observation network in the biological sciences. Biological Conservation 142:2282–2292.
Tang, Z., Z. Wang, C. Zheng, and J. Fang (2006). Biodiversity in China’s mountains. Frontiers in Ecology and the Environment 4:347–352.
Tajima, F. (1989). The effect of change in population size on DNA polymorphism. Genetics 123:597 LP – 601.
Tian, S., Y. Kou, Z. Zhang, L. Yuan, D. Li, J. López-Pujol, D. Fan, and Z. Zhang (2018). Phylogeography of Eomecon chionantha in subtropical China: The dual roles of the Nanling Mountains as a glacial refugium and a dispersal corridor. BMC Evolutionary Biology 18:1–12.
Tian, S., J. López-Pujol, H. W. Wang, S. Ge, and Z. Y. Zhang (2010). Molecular evidence for glacial expansion and interglacial retreat during Quaternary climatic changes in a montane temperate pine (Pinus kwangtungensis Chun ex Tsiang) in southern China. Plant Systematics and Evolution 284:219–229.
Tobias, J. A., J. Ottenburghs, and A. L. Pigot (2020). Avian Diversity: Speciation, Macroevolution, and Ecological Function. Annual Review of Ecology, Evolution, and Systematics 51:533–560.
Tobias, J. A., C. Sheard, A. L. Pigot, A. J. M. Devenish, J. Yang, F. Sayol, N. Alioravainen, T. L. Weeks, R. A. Barber, P. A. Walkden, H. E. A. Macgregor, et al. (2022). AVONET : morphological , ecological and geographical data for all birds. 581–597.
Turcotte, Y., and A. Desrochers (2003). Landscape-dependent response to predation risk by forest birds. Oikos 100:614–618.
Wang, J., C. Feng, T. Jiao, E. B. Von Wettberg, and M. Kang (2017). Genomic signature of adaptive divergence despite strong nonadaptive forces on edaphic islands: A case study of Primulina juliae . Genome Biology and Evolution 9:3495–3508.
Wang, J., P. Gao, M. Kang, A. J. Lowe, and H. Huang (2009). Refugia within refugia: the case study of a canopy tree ( Eurycorymbus cavaleriei ) in subtropical China. Journal of Biogeography 36:2156–2164.
White, A. E. (2016). Geographical Barriers and Dispersal Propensity Interact to Limit Range Expansions of Himalayan Birds. The American Naturalist 188:99–112.
Williamson, J. L., and C. C. Witt (2021). Elevational niche-shift migration: Why the degree of elevational change matters for the ecology, evolution, and physiology of migratory birds. Ornithology 138.
Wright, S. (1943). Isolation by distance. Genetics 28:114–138.
Wu, Y., J. Huang, M. Zhang, S. Luo, Y. Zhang, F. Lei, F. H. Sheldon, and F. Zou (2012). Genetic divergence and population demography of the Hainan endemic Black-throated Laughingthrush (Aves: Timaliidae, Garrulax chinensis monachus) and adjacent mainland subspecies. Molecular Phylogenetics and Evolution 65:482–489.
Xu, H., Y. Wu, Y. Cao, M. Cao, W. Tong, Z. Le, X. Lu, J. Li, F. Ma, L. Liu, F. Hu, et al. (2018). Low overlaps between hotspots and complementary sets of vertebrate and plant species in China. Biodiversity and Conservation 27:2713–2727.
Zhao, Z. (2001). The handbook of the birds of China. 2nd edition. Jilin Science and Technology Press, Jilin.
Zou, F., H. Chuan Lim, B. D. Marks, R. G. Moyle, and F. H. Sheldon (2007). Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: A case of remarkable genetic divergence in a “species”. Molecular Phylogenetics and Evolution 44:165–174.