Potential RNA/ ribosome-binding proteins |
Potential
RNA/ ribosome-binding proteins |
Potential RNA/
ribosome-binding proteins |
Potential RNA/ ribosome-binding
proteins |
Potential RNA/ ribosome-binding
proteins |
YqeY |
16.09 |
Majority of bacteria |
may have tRNA amino acid amidase
activity (COG) |
rpsU (operon) |
YtpR |
13.08 |
Bacilli, some Mollicutes |
tRNA-binding domain, interacts
with GatB (IAX, O’Reilly), may participate in GatABC activity |
GatB
(O’Reilly et al., 2023) |
YabR
|
14.31
|
Many Firmicutes and few other bacteria
|
RNA-binding S1 domain, ribosome-interacting protein (O’Reilly), paralog
of YugI
|
rcqP, divIC (operon)
RcqU (O’Reilly et al., 2023)
|
YugI |
14.13 |
Many Firmicutes and few other bacteria |
RNA-binding S1
domain, ribosome-interacting protein (O’Reilly), paralog of
YabR
|
Pgk, EzrA (O’Reilly et al., 2023) |
YrzB
|
13.30
|
Many Firmicutes
|
Associated to the ribosome (IAX, O’Reilly)
|
RplR, RplT, RpmF, RpsN, RpsL (O’Reilly et al., 2023)
reoM (operon)
|
YlxR |
13.90 |
Widespread in bacteria, but not in beta- and
gamma-Proteobacteria |
May bind to RNA (by similarity, Lamm-Schmidt et
al., 2021) |
nusA, rplGA, infB, rbfA
(operon) |
KhpA |
13.74 |
Widespread in bacteria, but not in alpha-, beta-,
gamma-Proteobacteria |
KH domain, putative RNA-binding protein |
ffh, rpsP, rimM, trmD, rplS
(operon) |
YlbN
|
15.42
|
Most bacteria and plant chloroplasts
|
essential in plants, required for 23S rRNA accumulation
|
rpmF (operon)
RpsJ (O’Reilly et al., 2023)
|
Potentially involved in the control of metabolism |
Potentially involved in the control of metabolism |
Potentially involved in the control of metabolism |
Potentially involved in the control of metabolism |
Potentially involved in the control of
metabolism |
YjlC |
14.52 |
Some bacteria and archaea |
operon with ndh, and
interaction with Ndh, may control Ndh activity |
Ndh (operon, O’Reilly
et al., 2023) |
YlaN |
14.00 |
Many Bacilli |
Essential in the absence of iron, putative
Fur effector |
Fur (O’Reilly et al., 2023) |
YqhY |
13.99 |
Many bacteria (not in proteobacteria) |
Asp23 family,
paralog of YloU, conserved gene cluster with accBC,
quasi-essential, may control fatty acid synthesis |
accB,
accC (operon) |
YloU |
13.18 |
Many bacteria (not in proteobacteria) |
Asp23 family,
paralog of YqhY, conserved gene cluster with fakA, may
control fatty acid phosphorylation |
fakA (operon) |
YneR
|
13.12
|
Bacilli
|
Interaction with PdhA and PdhB, inbits PDH activity (IAX, O’Reilly),
renamed PdhI
|
PhdA, PdhB (O’Reilly et al., 2023)
plsY (operon)
|
Potential regulatory elements |
Potential regulatory
elements |
Potential regulatory elements |
Potential
regulatory elements |
Potential regulatory
elements |
YtzK |
14.32 |
B. subtilis |
May be regulatory element for
tyrS expression |
acsA, tyrS
(operon) |
YpzE |
13.12 |
B. subtilis |
Upstream of ribU, may control
expression of ribU
|
ribU (operon) |
YwzH |
13.76 |
Bacillus sp. |
First gene of the dlt operon
for teichoic acid biosynthesis, microprotein, may control expression of
the operon |
dltABCDE (operon) |
YqzL |
13.73 |
Bacillus sp. |
Microprotein |
cdd,
era, recO (operon) |
Other highly expressed unknown proteins |
Other highly
expressed unknown proteins |
Other highly expressed unknown
proteins |
Other highly expressed unknown proteins |
Other highly expressed unknown proteins |
YkaA |
13.50 |
Many bacteria and archaea |
Putative phosphate transport
regulator (COG) |
pit (operon) |
YjcF |
13.49 |
Widespread in bacteria & euryarchaeota |
Predicted
N-acyltransferase, GNAT family, operon with yjcH |
Pta,
RplW (O’Reilly et al., 2023) |
YjcH |
13.43 |
Widespread in bacteria |
Operon with yjcF |
|
YhaH |
13.35 |
Widespread in bacteria, but not in alpha-, beta-,
gamma-Proteobacteria |
Membrane protein, paralog of YtxH
|
AccA
(O’Reilly et al., 2023) |
YtxH |
13.99 |
Widespread in bacteria, but not in alpha-, beta-,
gamma-Proteobacteria |
Paralog of YhaH
|
brxC
(operon) |
YqgA |
15.22 |
Closely related Bacillus species |
attached to
cell wall, division sites |
|
YybN |
14.66 |
B. subtilis |
|
|
YeeI |
13.32 |
Nearly all bacteria |
Putative regulatory protein (COG) |
|
YydD |
13.24 |
Very few bacteria |
Low expression during sporulation |
|
YhjA |
13.80 |
Some Bacillus sp. |
|
|
YpjP |
13.43 |
Bacillus sp. |
Low expression during sporulation |
thyB, dfrA (operon) |
YkuJ
|
14.01
|
Many Bacilli
|
Operon with ykuK, abbB, darB and
ccpC
|
NusA (O’Reilly et al., 2023)
abbB, darB, ccpC (operon)
|
YkuK |
13.22 |
Many Bacilli |
Operon with ykuJ,
abbB, darB and ccpC
|
abbB, darB,
ccpC (operon) |
YocA |
13.10 |
Most bacteria |
Membrane protein, glycoside hydrolase
family 23 (UinProt) |
|
YqkB |
13.06 |
Many Bacilli |
Predicted Fe-S cluster biosynthesis
protein (COG) |
|
YneF |
14.51 |
Most Bacilli and all Mollicutes |
Membrane protein,
essential |
sirA (operon) |
YubF |
13.02 |
Bacillus sp. |
Membrane protein |
lytG
(operon) |
YfhC |
13.03 |
Most bacteria and archaea |
Nitroreductase (COG) |
|
YqxD |
14.10 |
Many Firmicutes and Proteobacteria |
|
dnaG,
sigA (operon) |
YusG |
14.09 |
Bacillus sp. |
|
gcvH
(operon) |
YaaK |
13.95 |
Widespread in all bacteria |
Putative DNA-binding protein |
dnaX, recR, bofA (operon) |
YhjA |
13.80 |
Some Bacillus sp. |
|
|
YlmG |
13.88 |
Many bacteria |
Membrane protein, cytochrome maturation
(COG) |
sepF (operon) |
YaaR |
13.55 |
Firmicutes, Spirochaetes, Thermotoga |
|
tmk,
holB, trmN6 (operon) |
YbzG |
15.78 |
Very few Firmicutes |
part of ribosomal protein/
translation factor/ rpoA operon |
|