2.1 Data collection
The ORegon CHild Absenteeism due to Respiratory Disease Study (ORCHARDS) is a prospective study of K-12 student absenteeism and acute respiratory illness (ARI) in a community setting. ORCHARDS is ongoing and has been described in depth elsewhere.7,8 The study is based in the Oregon School District, located in Southcentral Wisconsin. The presence of influenza within the school district is verified through home visits where research staff record demographic and symptom information and collect a nasal specimen and an oropharyngeal or a nasopharyngeal (NP/OP) specimen from eligible students. To participate, children must be experiencing at least two ARI symptoms that began within seven days of a parent or guardian calling the study phoneline, as well as a Jackson score of at least 2.9
Research staff perform a RIDT on the student’s nasal specimen using the Quidel Sofia® Influenza A + B FIA and notify the family of the result the same day as specimen collection, usually within 6 hours of the home visit. The nasal swab is subsequently combined with the NP/OP swab in viral transport media and shipped via courier to the Wisconsin State Lab of Hygiene. The combined nasal and NP/OP specimens are tested for influenza A and B virus and Human RNase P using the CDC Human Influenza Virus Real‐time RT‐PCR Diagnostic Panel (Cat. # FluIVD03). Student specimens are also tested for non-influenza respiratory viruses using a multiplexed PCR respiratory pathogen panel (RPP: Luminex NxTAG Respiratory Pathogen Panel).
For this analysis, we used data and specimens collected during six sequential influenza seasons—2014-2015 through 2019-2020. The ORCHARDS protocol was reviewed and approved by the University of Wisconsin Health Sciences Institutional Review Board.