Supplementary files
Supplementary Data A : GO Term Enrichment tables for each comparison
presented here. Each spreadsheet contains pages for each type of GO term
enrichment (Biological Process, Molecular Function, and Cellular
Component). In addition to the GO term enrichment statistics, lists of
the DEGs annotated with different terms are included.
Supplementary Data B : Comparison of average counts-per-million reads
(CPM) and coefficient of variation for genes that were significant in
the GLM direct effect (DE) and indirect effect (IDE) comparisons. These
values are compared within sample type (same caste, tissue, and
supergene genotype).
Supplementary Data C : Compendium data sheet for all differential
expression analyses. Average CPM values are computed on a per-tissue
basis (Gyne Brains, Gyne Ovaries, Worker Brains, Worker Gasters, and
GLM). For each comparison, logFC and FDR-corrected p-values are
included.
Supplementary Data D : Table listing the names of significant DEGs in
both direct effect and indirect effect comparisons (overlaps in Figure
4). Presence within the Sb inversions indicated.
Supplementary Data E : Principal Components Analysis of logCPM values
for each caste and tissue type.
Supplementary Data F : STAR alignment statistics by sample.