Supplementary files
Supplementary Data A : GO Term Enrichment tables for each comparison presented here. Each spreadsheet contains pages for each type of GO term enrichment (Biological Process, Molecular Function, and Cellular Component). In addition to the GO term enrichment statistics, lists of the DEGs annotated with different terms are included.
Supplementary Data B : Comparison of average counts-per-million reads (CPM) and coefficient of variation for genes that were significant in the GLM direct effect (DE) and indirect effect (IDE) comparisons. These values are compared within sample type (same caste, tissue, and supergene genotype).
Supplementary Data C : Compendium data sheet for all differential expression analyses. Average CPM values are computed on a per-tissue basis (Gyne Brains, Gyne Ovaries, Worker Brains, Worker Gasters, and GLM). For each comparison, logFC and FDR-corrected p-values are included.
Supplementary Data D : Table listing the names of significant DEGs in both direct effect and indirect effect comparisons (overlaps in Figure 4). Presence within the Sb inversions indicated.
Supplementary Data E : Principal Components Analysis of logCPM values for each caste and tissue type.
Supplementary Data F : STAR alignment statistics by sample.