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Data Availability Statement: The data presented in this study are available in the Sequence Read Archive (SRA) database, BioProject: PRJNA776710 and PRJNA778655. The Takin1.0 genome has been submitted to the GenBank database.
Author Contributions: Conceptualization, Y. J. and A. L.; Methodology and Validation, Q. Y., K. C., R. L. and X. D.; Formal Analysis, A. L. and Q. Y.; Resources, Y. L., K. J. and L. Z.; Writing – Original Draft Preparation, A. L.; Writing – Review & Editing, Y. J., R. L., Q. Y. and X. D.; Supervision, Y. J. and L. Z.; Project Administration, Y. J. and A. L.; Funding Acquisition, L. Z. All authors have read and agreed to the published version of the manuscript.
Conflicts of Interest: The authors declare no competing financial interest.
Supplemental Figures and Tables (Captions)
Figure S1. The collinearity relationship between takin and goat genome.
Figure S2. The collinearity relationship between takin and sheep genome.
Figure S3. Phylogeny of the subfamily Caprinae in the genomic level with bootstrap.
Table S1 Summary of HiFi reads.
Table S2 Comparison of well-assembled genomes.
Table S3 Assessment of genome completeness.
Table S4 Repeat content of Takin.
Table S5 Simple repeats content of Takin.
Table S6 Lengths of reconstructed ancestral chromosome (chr) karyotypes of Bovidae
Table S7 Genome resequencing of 9 golden takins.
Table S8 The statistics of ROH.
Table 1. Assembly statistics of takin genome