Python Packages |
Python Packages |
Biopython (Cock et al., 2009) |
Biopython is a set of freely available
tools for common bioinformatics tasks including biological
computation. |
PyQt5 (https://pypi.org/project/PyQt5/) |
PyQt is a Python binding
of the cross-platform GUI toolkit Qt. |
gffutils (https://github.com/daler/gffutils) |
gffutils is for
working with and manipulating the GFF and GTF format files typically
used for genomic annotations. |
Pyfastx (Du et al., 2021) |
The pyfastx is a lightweight Python C
extension that enables users to randomly access sequences from plain and
gzipped FASTA/Q files. |
Executable Programs |
Executable Programs |
BLAST+ (v2.11.0) (Camacho et al., 2009) |
BLAST+ is a sequence
similarity searching tool with an enhancement of speed and query
length. |
BLAT (v3.2.1) (Altschul, 1997) |
BLAT is an alignment tool like BLAST
and is useful for aligning long sequences and gapped
mapping. |