References
Alaux, C., Jaisson, P., & Hefetz, A. (2004). Queen influence on worker
reproduction in bumblebees (Bombus terrestris ) colonies.Insectes Sociaux, 51 (3), 287-293. doi:10.1007/s00040-004-0741-5
Alaux, C., Le Conte, Y., Adams, H. A., Rodriguez-Zas, S., Grozinger, C.
M., Sinha, S., & Robinson, G. E. (2009). Regulation of brain gene
expression in honey bees by brood pheromone. Genes Brain Behav,
8 (3), 309-319. doi:10.1111/j.1601-183X.2009.00480.x
Amsalem, E. (2020). Chapter Four - One problem, many solutions: Female
reproduction is regulated by chemically diverse pheromones across
insects. In R. Jurenka (Ed.), Advances in Insect Physiology (Vol.
59, pp. 131-182): Academic Press.
Amsalem, E., Galbraith, D. A., Cnaani, J., Teal, P. E., & Grozinger, C.
M. (2015). Conservation and modification of genetic and physiological
toolkits underpinning diapause in bumble bee queens. Molecular
Ecology, 24 (22), 5596-5615. doi:10.1111/mec.13410
Amsalem, E., Grozinger, C. M., Padilla, M., & Hefetz, A. (2015). The
physiological and genomic bases of bumble bee social behaviour. In Z.
Amro & F. K. Clement (Eds.), Genomics, Physiology and Behaviour
of Social Insects (Vol. 48, pp. 37-93). Adv In Insect Phys: Academic
Press.
Amsalem, E., & Hefetz, A. (2010). The appeasement effect of sterility
signaling in dominance contests among Bombus terrestris workers.Behavioral Ecology and Sociobiology, 64 (10), 1685-1694.
doi:10.1007/s00265-010-0982-4
Amsalem, E., & Hefetz, A. (2011). The effect of group size on the
interplay between dominance and reproduction in Bombus
terrestris . PLoS One, 6 (3), e18238.
doi:10.1371/journal.pone.0018238
Amsalem, E., Malka, O., Grozinger, C., & Hefetz, A. (2014). Exploring
the role of juvenile hormone and vitellogenin in reproduction and social
behavior in bumble bees. BMC Evolutionary Biology, 14 (1), 45.
doi:10.1186/1471-2148-14-45
Amsalem, E., Padilla, M., Schreiber, P. M., Altman, N. S., Hefetz, A.,
& Grozinger, C. M. (2017). Do bumble bee, Bombus impatiens ,
queens signal their reproductive and mating status to their workers?J Chem Ecol, 43 (6), 563-572. doi:10.1007/s10886-017-0858-4
Andrews, S. (2010). FastQC: a quality control tool for high throughput
sequence data. In: Babraham Bioinformatics, Babraham Institute,
Cambridge, United Kingdom.
Badisco, L., Claeys, I., Van Loy, T., Van Hiel, M., Franssens, V.,
Simonet, G., & Broeck, J. V. (2007). Neuroparsins, a family of
conserved arthropod neuropeptides. General and Comparative
Endocrinology, 153 (1), 64-71.
doi:https://doi.org/10.1016/j.ygcen.2007.03.008
Becker, R. A., Chambers, J. M., & Wilks, A. R. (1988). The New S
Language : Wadsworth & Brooks/Cole.
Beggs, K. T., Glendining, K. A., Marechal, N. M., Vergoz, V., Nakamura,
I., Slessor, K. N., & Mercer, A. R. (2007). Queen pheromone modulates
brain dopamine function in worker honey bees. Proc Natl Acad Sci U
S A, 104 (7), 2460-2464. doi:10.1073/pnas.0608224104
Bloch, G., & Hefetz, A. (1999). Regulation of reproduction by dominant
workers in bumblebee (Bombus terrestris ) queenright colonies.Behavioral Ecology and Sociobiology, 45 (2), 125-135.
doi:10.1007/s002650050546
Boer, S. P. A. d., & Duchateau, M. J. H. M. (2006). A larval hunger
signal in the bumblebee Bombus terrestris . Insectes
Sociaux, 53 (3), 369-373. doi:10.1007/s00040-006-0883-8
Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: a flexible
trimmer for Illumina sequence data. Bioinformatics, 30 (15),
2114-2120. doi:10.1093/bioinformatics/btu170
Cnaani, J., Schmid-Hempel, R., & Schmidt, J. O. (2002). Colony
development, larval development and worker reproduction in Bombus
impatiens Cresson . Insectes Sociaux, 49 (2), 164-170.
doi:10.1007/s00040-002-8297-8
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha,
S., . . . Gingeras, T. R. (2013). STAR: ultrafast universal RNA-seq
aligner. Bioinformatics, 29 (1), 15-21.
doi:10.1093/bioinformatics/bts635
Duchateau, M. J., & Velthuis, H. H. W. (1988). Development and
reproductive strategies in Bombus terrestris colonies.Behavior, 107 , 186-207.
Ebie, J. D., Holldobler, B., & Liebig, J. (2015). Larval regulation of
worker reproduction in the polydomous ant Novomessor cockerelli .Naturwissenschaften, 102 (11-12), 72.
doi:10.1007/s00114-015-1323-2
Ewels, P., Magnusson, M., Lundin, S., & Käller, M. (2016). MultiQC:
summarize analysis results for multiple tools and samples in a single
report. Bioinformatics, 32 (19), 3047-3048.
doi:10.1093/bioinformatics/btw354
Fischer, P., & Grozinger, C. M. (2008). Pheromonal regulation of
starvation resistance in honey bee workers (Apis mellifera).Naturwissenschaften, 95 (8), 723-729.
doi:10.1007/s00114-008-0378-8
Girardie, J., Boureme, D., Couillaud, F., Tamarelle, M., & Girardie, A.
(1987). Anti-juvenile effect of neuroparsin A, a neuroprotein isolated
from locust corpora cardiaca. Insect Biochemistry, 17 (7),
977-983. doi:https://doi.org/10.1016/0020-1790(87)90106-5
Grozinger, C. M., Sharabash, N. M., Whitfield, C. W., & Robinson, G. E.
(2003). Pheromone-mediated gene expression in the honey bee brain.Proc Natl Acad Sci U S A, 100 Suppl 2 , 14519-14525.
doi:10.1073/pnas.2335884100
Harrison, M. C., Hammond, R. L., & Mallon, E. B. (2014). Reproductive
workers show queen-like gene expression in an intermediately eusocial
insect, the buff-tailed bumble bee Bombus terrestris .Molecular Ecology, 24 (12), 3043-3063.
He, X. J., Zhou, L. B., Pan, Q. Z., Barron, A. B., Yan, W. Y., & Zeng,
Z. J. (2017). Making a queen: an epigenetic analysis of the robustness
of the honeybee (Apis mellifera) queen developmental pathway. Mol
Ecol, 26 (6), 1598-1607. doi:10.1111/mec.13990
Hoffman, G. E., & Schadt, E. E. (2016). variancePartition: interpreting
drivers of variation in complex gene expression studies. BMC
Bioinformatics, 17 (1), 483. doi:10.1186/s12859-016-1323-z
Holman, L., Helanterä, H., Trontti, K., & Mikheyev, A. S. (2019).
Comparative transcriptomics of social insect queen pheromones.Nature Communications, 10 (1), 1593.
doi:10.1038/s41467-019-09567-2
Kolde, R., & Kolde, M. R. (2015). Package ‘pheatmap’. R package,
1 (7), 790.
Le Conte, Y., Arnold, G., Trouiller, J., Masson, C., & Chappe, B.
(1990). Identification of a brood pheromone in honeybees.Naturwissenschaften, 77 (7), 334-336.
Le Conte, Y., Mohammedi, A., & Robinson, G. E. (2001). Primer effects
of a brood pheromone on honeybee behavioural development. Proc
Biol Sci, 268 (1463), 163-168. doi:10.1098/rspb.2000.1345
Leek, J. T., Johnson, W. E., Parker, H. S., Jaffe, A. E., & Storey, J.
D. (2012). The sva package for removing batch effects and other unwanted
variation in high-throughput experiments. Bioinformatics (Oxford,
England), 28 (6), 882-883. doi:10.1093/bioinformatics/bts034
Leonhardt, S. D., Menzel, F., Nehring, V., & Schmitt, T. (2016).
Ecology and evolution of communication in social insects. Cell,
164 (6), 1277-1287. doi:10.1016/j.cell.2016.01.035
Li, B., & Dewey, C. N. (2011). RSEM: accurate transcript quantification
from RNA-Seq data with or without a reference genome. BMC
Bioinformatics, 12 (1), 323. doi:10.1186/1471-2105-12-323
Libbrecht, R., Oxley, P. R., & Kronauer, D. J. C. (2018). Clonal raider
ant brain transcriptomics identifies candidate molecular mechanisms for
reproductive division of labor. BMC Biology, 16 (1), 89.
doi:10.1186/s12915-018-0558-8
Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of
fold change and dispersion for RNA-seq data with DESeq2. Genome
biology, 15 (12), 550. doi:10.1186/s13059-014-0550-8
Ma, Rangel, & Grozinger. (2019). Honey bee (Apis mellifera )
larval pheromones may regulate gene expression related to foraging task
specialization. BMC Genomics, 20 (1), 592.
doi:10.1186/s12864-019-5923-7
Michener, C. D. (2007). The bees of the world . Baltimore: The
Johns Hopkins University Press.
Opachaloemphan, C., Mancini, G., Konstantinides, N., Parikh, A.,
Mlejnek, J., Yan, H., . . . Desplan, C. (2021). Early behavioral and
molecular events leading to caste switching in the ant Harpegnathos.Genes & Development, 35 (5-6), 410-424.
Orlova, M., Starkey, J., & Amsalem, E. (2020). A small family business:
synergistic and additive effects of the queen and the brood on worker
reproduction in a primitively eusocial bee. The Journal of
Experimental Biology, 223 (3), jeb217547. doi:10.1242/jeb.217547
Orlova, M., Treanore, E. D., & Amsalem, E. (2020). Built to change:
dominance strategy changes with life stage in a primitively eusocial
bee. Behavioral Ecology .