Table 4. Summary of Macquarie perch individual-based strelka genotypes for nine WGS-derived SNPs with male-specific alleles (CMH test p<1e-20), plus two sex-linked indels within the 146-bp sexing region of scaffold 633 (SEMN01000633) bases 93182-93327 (this region is shown in bold). F0 ref hom/M0 ref hom = number of females/males homozygous for reference allele, F1 het/M1 het = number of females/males that are heterozygous, F2 alt hom/M2 alt hom = number of females/males that are homozygous for the alternative SNP allele. When more than one alternative allele was present, M2 alt hom is the count of homozygotes at the more common alternative allele. Loci are sorted by scaffold number/position in a scaffold. Sex-linkage pattern: recent-Y- loci bearing recent-Y-specific polymorphism, XY- XY-gametologs, Y0- in males Y allele is present but X is not (due to low coverage or deletion).