References:
Chen, G. Q., Zhuang, Q. Y., Wang, K. C., Liu, S., Chen, J. M. (2013). Identification and survey of a novel avian coronavirus in ducks. PLoS ONE. 8(8):e72918. https:// doi.org/10.1371/journal.pone.0072918
Chen, N. S., Zhou, M., Dong, X., Qu, J. M., Zhang, L. (2020). Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study. The Lancet. 395:507-513. https://doi.org/ 10.1016/S0140-6736(20) 30211-7
Cheng, V. C., Lau, S. K., Woo, P. C., Yuan, K. Y. (2017). Severe acute respiratory syndrome coronavirus as an agent of emerging and reemerging infection. Clinical Microbiology Reviews.20:660–694. https://doi.org/10.1128/CMR.000 23-07
Ghinai, I., McPherson, T. D., Hunter, J. C., Kirking, H. L., Christiansen, D., Joshi, K., … Layden, J. E. (2020). First known person-to-person transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in the USA. Lancet. 395:1137-1144. https://doi.org/10.1016/S0140-6736 (20)30607-3
Guan, Y., Zheng, B. J., He, Y. Q., Liu, X. L., Zhuang, Z. X., Cheng, C. L., … Poon, L. L. M. (2003). Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science. 302:276–278. https://doi.org/10.1126/ science. 1087139
Guo, Y. R., Cao, Q. D., Hong, Z. S., Tan, Y. Y., Yan, Y. (2020). The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak-an update on the status. Military Medical Research. 7(1). https://doi.org/10.1186/ s40779- 020-00240-0
Hall, B. G. (2013). Building phylogenetic trees from molecular data with MEGA. Mol Biol Evol. 30(5):1229–1235. https://doi.org/10.1093/molbev/mst012
Huang, C. L., Wang, Y. M., Li, X. W., Ren, L. L., Zhao, J. P., Hu, Y., … Cao, B. (2020). Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. The Lancet. 395:497-506. https://doi.org/10.1016/S0140-6736 (20)30183-5
Jiang, W. M., Liu, S., Hou, G. Y., Li, J. P., Zhuang, Q. Y., Wang, S. C., … Chen, J. M. (2012). Chinese and global distribution of H9 subtype avian influenza viruses. PLoS One. 7(12):e52671. https://doi.org/10.1371/journal.pone.0052671
Jonassen, C. M., Kofstad, T., Larsen, I. L., Løvland, A., Handeland, K., Follestad, A., … Lillehasug, A. (2005). Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos). J Gen Virol. 86(6):1597- 1607. https://doi.org/10.1099/ vir.0.80927-0
Jordan, B. J., Hilt, D. A., Poulson, R., Stallknecht, D. E., Jackwood, M. W. (2015). Identification of avian coronavirus in wild aquatic birds of the central and eastern USA. Journal of Wildlife Diseases. 51:218–221. https://doi.org/10.7589/2014- 03-070
Khan, S., Siddique, R., Shereen, M. A., Ali, A., Liu, J. B., Bai, Q., Bashir, N. (2020). The emergence of a novel coronavirus (SARS-CoV-2), their biology and therapeutic options. Journal of clinical microbiology. 58(5). https://doi.org/10.11 28/JCM. 00187-20
King, A. A. Q., Adams, M. J., Carstens, E. B. (2012). Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press. 806–828, 1276. https://doi.org/10.1159/000149278
King, A. M. Q., Carstens, E. B., Lefkowitz, E. J. (2011). Ninth report of the international committee on taxonomy of viruses. Paramyxoviridae. 329-426.
Li, W. H. (1997). Molecular evolution. Sunderland: Sinauer Associates Inc. 149–175. https://doi.org/10.1371/journal.pone.0052671
Liu, Y., Gayle, A. A., Wilder-Smith, A., Rocklv, J. (2020). The reproductive number of COVID-19 is higher compared to SARS coronavirus. Journal of travel medicine. 27. https://doi.org/10.1093/jtm/taaa021
Marra, M. A., Jones, S. J. M., Astell, C. R., Holt, R. A., Brooks-Wilson, A., Butterfield, Y. S. N., … Roper, R. L. (2003). The Genome sequence of the SARS-associated coronavirus. Science. 2003; 300:1399-1404. https://doi.org/ 10.11 26/science.1085953
Martina, B. E., Haagmans, B. L., Kuiken, T., Fouchier, R. A. M., Rimmelzwaan, G. F., Amerongen, G. V., … Osterhaus, A. D. M. E. (2003). Virology: SARS virus infection of cats and ferrets. Nature. 425(6961):915. https://doi.org/10.1 038/425915a
Oreshkova, N., Molenaar, R. J., Vreman, S., Harders, F., Stegeman, A. (2020). SARS-CoV-2 infection in farmed minks, the Netherlands, April and May 2020. Eurosurvllance. 25(23). https://doi.org/10.2807/1560-7917.ES.2020.25.23.2001 005
Phan, T. (2020). Genetic diversity and evolution of SARS-CoV-2. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 81, 104260. https://doi.org/10.1016/j.meegid. 2020. 104260
Rota, P. A., Oberste, M. S., Monroe, S. S., Nix, W. A., Campagnoli, R., Icenogle. J. P., … Bellini, W. J. (2003). Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science. 300:1394-1399. https://doi.org/ 10.1126/science.10859 52
Shi, J. Z., Wen, Z. Y., Zhong, G. X., Yang, H. L., Wang, C., Huang, B. Y., … Bu, Z. G. (2020). Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS–coronavirus 2. Science. 368(6494): 1016-1020. https://doi.org/10.1126/ science.abb7015
Sit, T. H. C., Brackman, C. J., Ip, S. M., Tam, K. W. S., Peiris, M. (2020). Infection of dogs with SARS-CoV-2. Nature. 586:776-778. https://doi.org/10.1038/s41586- 020- 2334-5
Stoecklin, S. B., Rolland, P., Silue, Y., Mailles, A., Levy-Bruhl, D. (2020). First cases of coronavirus disease 2019 (COVID-19) in France: surveillance, investigations and control measures. Eurosurveillance. 25(6). https://doi.org/10.2807/1560- 7917.ES.2020.25.6. 2000094
Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30(12): 2725– 2729. https://doi.org/10.1093/molbev/mst197
Thiermann, A. B. (2015). International standards: The world organisation for animal health terrestrial animal health code. Revue Scientifique Et Technique. 34(1):277–281. https://doi.org/10.20506/rst.34.1.2340
Tuite, A. R., Ng, V., Rees, E., Fisman, D. (2020). Estimation of COVID-19 outbreak size in Italy based on international case exportations. The Lancet infectious diseases. 20(5):537-537. https://doi.org/10.1101/2020.03.02.20030049
Wang, C., Horby, P. W., Hayden, F. G., Gao, G. (2020). A novel coronavirus outbreak of global health concern. Lancet. 395:470-473.https://doi.org/10.1016/S0140- 6736(20)30185-9
Woo, .P C. Y., Lau, S. K. P., Lam, C. S. F., Lai, K, K, Y., Huang, Y., Lee, P., … Yuan, K. Y. (2009). Comparative analysis of complete genome sequences of three avian coronaviruses reveals a novel group 3c coronavirus. Journal of Virology. 83:908–917. https://doi. org/10.1128/JVI. 01977-08
Woo, P. C. Y., Lau, S. K. P., Yip, C. C. Y., Huang, Y., Tsoi, H. W., Chan, K. H., Yuan, K. Y. (2006). Comparative analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and evidence of natural recombination in coronavirus HKU1. Journal of Virology. 80:7136-7145. https://doi.org/10.1128/JVI.00509-06
Zhang, Z. P., Xiao, K. P., Zhang, X., Roy, A., Shen, Y. Y. (2020). Emergence of SARS-like coronavirus in China: An update[J]. Journal of Infection. 80(5): e28-e29. https://doi.org/ 10.1016/j.jinf.2020.03.010
Zhou, P., Yang, X. L., Wang, X. G., Hu, B., Zhang, L., Zhang, W. (2020). A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 579:270–273. https://doi.org/10.1038/s41586-020-2012-7
Zhou, P., Yang, X. L., Wang, X. G., Hu, B., Zhang, L., Zhang, W., … Shi, Z. L. (2020). A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 579 (7798):270-273. https://doi.org/10.1038/s41586-020-2012-7
Zhuang, Q. Y., Liu, S., Zhang, X. C., Jiang, W. M., Wang, K. C., Wang, S. C. (2020). Surveillance and taxonomic analysis of the coronavirus dominant in pigeons in China. Transboundary and Emerging Diseases. 67(5):1981-1990. https://doi.org/ 10.1111/tbed.13541