REFERENCES
ABDUL RASHEED WAR, GAURAV KUMAR TAGGAR, BARKAT HUSSAIN, MONICA SACHDEVA
TAGGAR, RAMAKRISHNAN M NAIR, HARI C SHARMA. (2018). Plant defense
against herbivory and insect adaptations. AoB PLANTS .
doi: https://doi.org/10.1093/aobpla/ply037. 2018.
ACHAL DHARIWAL, JASMINE CHONG, SALAM HABIB, IRAH L. KING, LUIS B.
AGELLON, JIANGUO XIA. (2017). Microbiome Analyst: a web-based tool for
comprehensive statistical, visual and meta-analysis of microbiome data.Nucleic Acids Research . doi: https://doi.org/10.1093/nar/gkx295.
2017.
AGRAWAL, A. A. (2002). Herbivory and maternal effects: mechanisms and
consequences of transgenerational induced plant resistance. Ecology. 83:
3408-3415. doi:10.1890/0012-9658(2002)083[3408: HAMEMA]2.0.CO;2.
AQUILANTI L, MANNAZZUI, PAPA R, CAVALCA L, CLEMENTI F. (2004). Amplified
ribosomal DNA restriction analysis for the characterization of
Azotobacteraceae: a contribution to the study of these free-living
nitrogen-fixing bacteria. J Microbiol Methods. 57:197–206.
BADRI, D. V. and VIVANCO, J. M. (2009). Regulation and function of root
exudates. Plant, Cell & Environment, 32: 666-681.
doi:10.1111/j.1365-3040.2009.01926. x.
BADRI, D. V., ZOLLA, G., BAKKER, M. G., MANTER, D. K. AND VIVANCO, J. M.
(2013). Potential impact of soil microbiomes on the leaf metabolome and
on herbivore feeding behavior. New Phytol, 198: 264-273.
doi:10.1111/nph.12124.
BAIS HARSH P., WEIR TIFFANY L., LAURA G. PERRY, SIMON GILROY, JORGE M.
VIVANCO. (2006). The role of root exudates in rhizosphere interactions
with plants and other organisms. Annual Review of Plant
Biology. 57:1, 233-266.
BARDOU P, MARIETTE J, ESCUDIN F, DJEMIEL C, KLOPP C. (2014) Jvenn: an
interactive Venn diagram viewer. BMC Bioinformatics 15. doi:
10.1186/1471-2105-15-293.
BENEDUZI A, PERES D, DA COSTA P B, ZANETTINI M H B , PASSAGLIA L M P.
(2008). Genetic and phenotypic diversity of plant-growth-promoting
bacilli isolated from wheat fields in southern Brazil. Res Microbiol.
159: 244–50.
BERTIN, C, YANG, X& WESTON, LA. (2003) The role of root exudates and
allelochemicals in the rhizosphere. Plant and Soil . 256:1,6-83.
doi: 10.1023/A:1026290508166.
BLAAZER CJH, VILLACIS-PEREZ EA, CHAFI R, VAN LEEUWEN T, KANT MR,
SCHIMMEL BCJ. (2018). Why Do Herbivorous Mites Suppress Plant
Defenses? Front Plant Sci . 9:1057. doi: 10.3389/fpls.2018.01057.
PMID: 30105039; PMCID: PMC6077234.
BOLOURI-MOGHADDAM M.R., LE ROY K., XIANG L., ROLLAND F., VAN DEN ENDE W.
(2010). Sugar Signalling and Antioxidant Network Connections in Plant
Cells. FEBS J. 277:2022–2037. doi: 10.1111/j.1742-4658.2010.07633.x.
BOSTOCK, R.M., KARBAN, R., THALER, J.S. ET AL. (2001). Signal
Interactions in Induced Resistance to Pathogens and Insect Herbivores.
European Journal of Plant Pathology. 107: 103.
https://doi.org/10.1023/A:1008703904253.
CALLAHAN BJ, MCMURDIE PJ, ROSEN MJ, HAN AW, JOHNSON AJ, HOLMES SP.
(2016). DADA2: High-resolution sample inference from Illumina amplicon
data. Nat Methods . 13(7):581-3. doi: 10.1038/nmeth.3869. PMID:
27214047; PMCID: PMC4927377.
CHENG F, CHENG Z. (2015). Research Progress on the use of Plant
Allelopathy in Agriculture and the Physiological and Ecological
Mechanisms of Allelopathy. Front Plant Sci . 6:1020. doi:
10.3389/fpls.2015.01020. Erratum in: Front Plant Sci. 08; 7:1697. PMID:
26635845; PMCID: PMC4647110. 2016.
DE-LA-PEÑA C, BADRI DV, LEI Z, WATSON BS, BRANDÃO MM, SILVA-FILHO MC,
SUMNER LW, VIVANCO JM. (2010). Root secretion of defense-related
proteins is development-dependent and correlated with flowering
time. J Biol Chem . 285(40):30654-65. doi:
10.1074/jbc.M110.119040. PMID: 20682788; PMCID: PMC2945560. 2010.
ELYA MASYA MOHD FISHAL, SARIAH MEON, WONG MUI YUN. (2010). Induction of
Tolerance to Fusarium Wilt and Defense-Related Mechanisms in the
Plantlets of Susceptible Berangan Banana Pre-Inoculated with Pseudomonas
sp. (UPMP3) and Burkholderia sp . (UPMB3). Agricultural Sciences
in China. 9:8. ISSN 1671-2927. doi:
https://doi.org/10.1016/S1671-2927(09)60201-7. 2010.
FARRANT J.M., COOPER K., HILGART A., ABDALLA K.O., BENTLEY J., THOMSON
J.A., DACE H.J.W., PETON N., MUNDREE S.G., RAFUDEEN M.S. (2015). A
Molecular Physiological Review of Vegetative Desiccation Tolerance in
the Resurrection Plant Xerophyta viscosa (Baker) Planta.
242:407–426. doi: 10.1007/s00425-015-2320-6.
FRANCO FLÁVIA P, MOURA DANIEL S, VIVANCO JORGE M, SILVA-FILHO MARCIO C.
(2017). Plant–insect–pathogen interactions: a naturally complex ménage
à trois. Current Opinion in Microbiology. doi:
https://doi.org/10.1016/j.mib.2017.04.007.
FERREIRA, D. F. (2019). Sisvar: a computer analysis system to fixed
effects split plot type designs. Revista brasileira de biometria. 37: 4;
529-535. ISSN 1983-0823. doi: https://doi.org/10.28951/rbb.v37i4.450.
FURUSAWA Y, OBATA Y, FUKUDA S, ENDO TA, NAKATO G, TAKAHASHI D, NAKANISHI
Y, UETAKE C, KATO K, KATO T, TAKAHASHI M, FUKUDA NN, MURAKAMI S,
MIYAUCHI E, HINO S, ATARASHI K, ONAWA S, FUJIMURA Y, LOCKETT T, CLARKE
JM, TOPPING DL, TOMITA M, HORI S, OHARA O, MORITA T, KOSEKI H, KIKUCHI
J, HONDA K, HASE K, OHNO H. (2013). Commensal microbe-derived butyrate
induces the differentiation of colonic regulatory T cells. Nature.
504:446–450. doi: 10.1038/ nature12721. PubMed: 24226770.
GLENN, T. C. (2011). Field guide to next‐generation DNA sequencers.
Molecular Ecology Resources, 11: 759-769.
doi:10.1111/j.1755-0998.2011.03024. x.
GORLACH, J., S. VOLRATH, F. KNAUF-BEITER, G. HENGY, U. BECKHOVE, K.-H.
KOGEL, M. OOSTENDORP, T. STAUB, E. WARD, H. KESSMANN, AND J. RYALS.
(1996). Benzothiadiazole, a novel class of inducers of systemic acquired
resistance, activates gene expression and disease resistance in wheat.
Plant Cell. 8:629–643.
HAHN, P. G. et al. (2019). Population Variation, Environmental
Gradients, and the Evolutionary Ecology of Plant Defense against
Herbivory. The American naturalist. 193: 1;20.
HAMMERSCHMIDT, R., MÉTRAUX, JP. & VAN LOON, L. (2001). European Journal
of Plant Pathology.107: 1. https://doi.org/10.1023/A:1008753630626.
HARSH PAL BAIS, SANG-WOOK PARK, TIFFANY L WEIR, RAGAN M CALLAWAY, JORGE
M VIVANCO. (2004). How plants communicate using the underground
information superhighway. Trends in Plant Science. 9:1; 26-32. ISSN
1360-1385. doi: https://doi.org/10.1016/j.tplants.2003.11.008. 2004.
HEIL M., KARBAN R. (2010). Explaining evolution of plant communication
by airborne signals, Trends in Ecology & Evolution. 25: 3; 137-144,
ISSN 0169-5347. doi:
https://doi.org/10.1016/j.tree.2009.09.010.http://www.sciencedirect.com/science/article/pii/S0169534709003000).
2010.
HOEKSTRA F.A., GOLOVINA E.A., BUITINK J. (2001). Mechanisms of Plant
Desiccation Tolerance. Trends Plant Sci. 6: 431–438. doi:
10.1016/S1360-1385(01)02052-0.
HU, L., ROBERT, C.A.M., CADOT, S. ET AL. (2018). Root exudate
metabolites drive plant-soil feedbacks on growth and defense by shaping
the rhizosphere microbiota. Nat Communications. 9: 2738.
doi:10.1038/s41467-018-05122-7.
HUANG, X.-F. et al. (2016). Supplementing Blends of Sugars, Amino Acids,
and Secondary Metabolites to the Diet of Termites (Reticulitermes
flavipes ) Drive Distinct Gut Bacterial Communities. Microbial ecology.
72:3; 497.
HUBBARD CJ, LI B, MCMINN R, BROCK MT, MAIGNIEN L, EWERS BE, KLIEBENSTEIN
D, WEINIG C. (2019). The effect of rhizosphere microbes outweighs host
plant genetics in reducing insect herbivory. Mol Ecol. doi:
10.1111/mec.14989. PMID: 30582660. 2019.
ISAWA T, YASUDA M, AWAZAKI H, ET AL (2010). Azospirillum sp.
strain B510 enhances rice growth and yield. Microbes Environ.
25:58–61.10.1264/jsme2.ME09174.
JING ZHAN, QINGYE SUN. (2012). Diversity of free-living nitrogen-fixing
microorganisms in the rhizosphere and non-rhizosphere of pioneer plants
growing on wastelands of copper mine tailings. Microbiological
Research . 167: 3; 157-165. ISSN 0944-5013. doi:
https://doi.org/10.1016/j.micres.2011.05.006.
KESSLER, A.; BALDWIN, I. T. (2002). Plant responses to insect herbivory:
the emerging molecular analysis. Annual review of plant biology. 53;
299. ISSN 1543-5008.
KLINDWORTH A, PRUESSE E, SCHWEER T, PEPLIES J, QUAST C, HORN M, GLÖCKNER
FO. (2013). Evaluation of general 16S ribosomal RNA gene PCR primers for
classical and next-generation sequencing-based diversity
studies. Nucleic Acids Res . 41:1. doi: 10.1093/nar/gks808. Epub.
PMID: 22933715; PMCID: PMC3592464. 2012.
KNOESTER, M., C.M.J. PIETERSE, J.F. BOL, AND L.C. VAN LOON. (1999).
Systemic resistance in Arabidopsis induced by rhizobacteria requires
ethylene-dependent signaling at the site of application. Mol.
Plant-Microb Interact. 12:720–727.
KONG HYUN G., KIM BYUNG K., SONG GEUN C., LEE SOOHYUN, RYU CHOONG-MIN.
(2016). Aboveground Whitefly Infestation-Mediated Reshaping of the Root
Microbiota. Frontiers in Microbiology. 7:1314. doi:
10.3389/fmicb.2016.01314. ISSN=1664-302X.
KRATTINGER, S. G. AND KELLER, B. (2016). Molecular genetics and
evolution of disease resistance in cereals. New Phytol. 212: 320-332.
doi:10.1111/nph.14097. 2016.
LABANDEIRA. C. C. (2013). A paleobiologic perspective on plant–insect
interactions. Current Opinion in Plant Biology. 16:4; 414-421. ISSN
1369-5266. doi: https://doi.org/10.1016/j.pbi.2013.06.003.
LEVY, M., THAISS, C. A., AND ELINAV, E. (2016). Metabolites: messengers
between the microbiota and the immune system. Genes Dev. 30,
1589–1597. doi: 10.1101/gad.284091.116
LI-LI GENG, GAO-XIANG SHAO, BEN RAYMOND, MEI-LING WANG, XIAO-XIAO SUN,
CHANG-LONG SHU, JIE ZHANG. (2018). Subterranean infestation byHolotrichia parallela larvae is associated with changes in the
peanut (Arachis hypogaea L.) rhizosphere microbiome.
Microbiological Research. 211. ISSN 0944-5013. doi:
/10.1016/j.micres.2018.02.008. 2018.
LOUWS, F.J., M. WILSON, H.L. CAMPBELL, D.A. CUPPELS, J.B. JONES, P.B.
SHOEMAKER, F. SAHIN, AND S.A. MILLER. (2001). Field control of bacterial
spot and bacterial speck of tomato using a plant activator. Plant Dis.
85:481–488.
LYON, G.D., T. REGLINSKI, AND A.C. NEWTON. (1995). Novel disease control
compounds: The potential to ‘immunize’ plants against infection. Plant
Pathol. 44:407–427.
MADALA, N. E., MOLINARO, A., & DUBERY, I. A. (2012). Distinct
carbohydrate and lipid-based molecular patterns within
lipopolysaccharides from Burkholderia cepacia contribute to
defense-associated differential gene expression in Arabidopsis
thaliana . Innate Immunity. 18:1;140–154. doi:
https://doi.org/10.1177/1753425910392609
MANTER DK, KORSA M, TEBBE C, DELGADO JA. (2016) MyPhyloDB: a local web
server for the storage and analysis of metagenomic data. Database: the
journal of biological databases and curation 2016. doi:
10.1093/database/baw037.
MARTIN, M. (2011). Cutadapt Removes Adapter Sequences from
High-Throughput Sequencing Reads. EMBnet Journal. 17; 10-12. doi:
https://doi.org/10.14806/ej.17.1.200.
MASLOWSKI KM, VIEIRA AT, NG A, KRANICH J, SIERRO F, YU D, SCHILTER HC,
ROLPH MS, MACKAY F, ARTIS D, XAVIER RJ, TEIXEIRA MM, MACKAY CR. (2009).
Regulation of inflammatory responses by gut microbiota and
chemoattractant receptor GPR43. Nature. 461:1282–1286. doi: 10.1038/
nature08530. PubMed: 19865172.
MELLO, MARCIA O.; SILVA-FILHO, MARCIO C. (2002). Plant-insect
interactions: an evolutionary arms race between two distinct defense
mechanisms. Braz. J. Plant Physiol., Londrina. 14:2;71-81.
MENDES RODRIGO, KRUIJT MARCO, IRENE DE BRUIJN, ESTER DEKKERS, MENNO VAN
DER VOORT, JOHANNES H. M. SCHNEIDER, YVETTE M. PICENO, TODD Z.
DESANTIS, GARY L. ANDERSEN, PETER A. H. M. BAKKER, JOS M. RAAIJMAKERS.
(2011). A common plant pathogen induces the growth of
disease-suppressive microbes in local soil communities. Science.1097:1100.
MOEKA FUJITA, MIYUKI KUSAJIMA, YASUKO OKUMURA, MASAMI NAKAJIMA, KIWAMU
MINAMISAWA & HIDEO NAKASHITA. (2017). Effects of colonization of a
bacterial endophyte, Azospirillum sp. B510, on disease resistance
in tomato. Bioscience, Biotechnology, and Biochemistry, 81:8, 1657-1662.
doi: 10.1080/09168451.2017.1329621.
MOORE J.P., LE N.T., BRANDT W.F., DRIOUICH A., FARRANT J.M. (2009).
Towards a Systems-based Understanding of Plant Desiccation
Tolerance. Trends Plant Sci. 14:110–117. doi:
10.1016/j.tplants.2008.11.007.
MORGANE O, LIONEL L., CHAMINADE VALÉRIE, GUILLERM-ERCKELBOUDT
ANNE-YVONNE, HERVÉ MAXIME, LINGLIN JULIETTE, MARNET NATHALIE, OURRY
ALAIN, PATY CHRYSTELLE, POINSOT DENIS, CORTESERO ANNE-MARIE, MOUGEL
CHRISTOPHE. (2018). Influence of Belowground Herbivory on the Dynamics
of Root and Rhizosphere Microbial Communities. Frontiers in Ecology and
Evolution. doi. 10.3389/fevo.2018.00091. ISSN=2296-701X.
MORRIS, S.W., B. VERNOOIJ, S. TITATARN, M. STARRETT, S. THOMAS, C.C.
WILTSE, R.A. FREDERIKSEN, A. BHANDHUFALCK, S. HULBERT, AND S. UKNES.
(1998). Induced resistance responses in maize. Mol. Plant- Microb.
Interact. 7:643–658.
MORRIS, W. F., TRAW, M. B. AND BERGELSON, J. (2006). On testing for a
tradeoff between constitutive and induced resistance. Oikos. 112:
102-110. doi:10.1111/j.0030-1299.2006.14253.x.
PIETERSE, C.M.J., S.C.M. VAN WEES, J.A. VAN PELT, M. KNOESTER, R. LAAN,
H. GERRITS, P.J. WEISBEEK, AND L.C. VAN LOON. (1998). A novel signaling
pathway controlling induced systemic resistance in Arabidopsis .
Plant Cell. 10:1571–1580.
ROHLAND N, REICH D. (2012). Cost-effective, high-throughput DNA
sequencing libraries for multiplexed target capture. Genome Res .
22(5):939-46. doi: 10.1101/gr.128124.111. PMID: 22267522; PMCID:
PMC3337438. 2012
ROSS, A.F. (1961). Systemic acquired resistance induced by localized
virus infections in plants. Virology 14:340–358.
RYAN C. A. (1990). Protease inhibitors in plants: genes for improving
defenses against insects and pathogens. Annual review of phytopathology.
28: 1. ISSN 425-49.
SHOUAN ZHANG, M. S. REDDY, NANCY KOKALIS-BURELLE, LARRY W. WELLS, STEVAN
P. NIGHTENGALE, AND JOSEPH W. (2001). Kloepper Lack of Induced Systemic
Resistance in Peanut to Late Leaf Spot Disease by Plant Growth-Promoting
Rhizobacteria and Chemical Elicitors. Plant Disease. 85:8, 879-884.
SMITH PM, HOWITT MR, PANIKOV N, MICHAUD M, GALLINI CA, BOHLOOLY-Y M,
GLICKMAN JN, GARRETT WS. (2013). The microbial metabolites, short-chain
fatty acids, regulate colonic Treg cell homeostasis. Science.
341:569–573. doi: 10.1126/science.1241165. PubMed: 23828891.
STICHER, L., B. MAUCH-MANI, AND J.-P. ME ̵́TRAUX. (1997). Systemic
acquired resistance. Annu. Rev. Phytopathol. 35:235–270.
SUGIO A, DUBREUIL G, GIRON D, SIMON JC. (2015). Plant-insect
interactions under bacterial influence: ecological implications and
underlying mechanisms. J Exp Bot. 66(2):467-78. doi: 10.1093/jxb/eru435.
PubMed PMID: 25385767.
TORTORA, M.L., DÍAZ-RICCI, J.C. & PEDRAZA, R.O. (2012). Protection of
strawberry plants (Fragaria ananassa Duch.) against anthracnose
disease induced by Azospirillum brasilense. Plant Soil. 356: 279.
doi: https://doi.org/10.1007/s11104-011-0916-6.
VALLAD, G. E., AND R. M. GOODMAN. (2004). Systemic Acquired Resistance
and Induced Systemic Resistance in Conventional Agriculture. Crop Sci.
44:1920-1934. doi:10.2135/cropsci2004.1920.
VAN LOON, L.C., P.A.H.M. BAKKER, AND C.M.J. PIETERSE. (1998). Systemic
resistance induced by rhizosphere bacteria. Annu. Rev. Phyto- pathol.
36:453–483. 1998.
VAN WEES, S.C.M., C.M.J. PIETERSE, A. TRIJSSENAAR, Y.A.M. VAN’T
WES-TENDE, F. HARTOG, AND L.C. VAN LOON. (1997). Differential induction
of systemic resistance in Arabidopsis by biocontrol bacteria.
Mol. Plant-Microb. Interact. 6:716–724.
WALKER T. S., BAIS H. P., GROTEWOLD E., VIVANCO. J.M. (2003). Plant
Physiology. 132 (1) 44-51; doi: 10.1104/pp.102.019661.
WILLSEY T, CHATTERTON S., CÁRCAMO H. (2017). Interactions of
Root-Feeding Insects with Fungal and Oomycete Plant Pathogens. Frontiers
in Plant Science. 8:2017. INSS 1764
YAN, Z., M.S. REDDY, C.-M. YYU, J.A. MCINROY, M. WILSON, AND J.W.
KLOEPPER. (2002). Induced systemic protection against tomato late blight
by plant growth-promoting rhizobacteria. Phytopathology 92:1329–1333.
YASUDA M, ISAWA T, SHINOZAKI S, ET AL. (2009). Effects of colonization
of a bacterial endophyte, Azospirillum sp. B510, on disease
resistance in rice. Biosci Biotechnol Biochem.
73:2595–2599.10.1271/bbb.90402.
ZEHNDER, G.W., YAO, C., MURPHY, J.F. ET AL. (2000). Induction of
resistance in tomato against cucumber mosaic cucumovirus by plant
growth-promoting rhizobacteria. BioControl. 45: 127.
https://doi.org/10.1023/A:1009923702103. 2000.
ZHOU D, HUANG XF, GUO J, DOS-SANTOS ML, VIVANCO JM.(2018).Trichoderma gamsii affected herbivore feeding behaviour onArabidopsis thaliana by modifying the leaf metabolome and
phytohormones. Microb Biotechnol . 11(6):1195-1206. doi:
10.1111/1751-7915.13310. PMID: 30221488; PMCID: PMC6196387.