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MaxEnt brings comparable results when the input data is being completed; model parameterization and background manipulation of four species distribution models
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  • Mohsen Ahmadi,
  • Mahmoud-Reza Hemami,
  • Mohammad Kaboli,
  • Farzin Shabani
Mohsen Ahmadi
Isfahan University of Technology

Corresponding Author:[email protected]

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Mahmoud-Reza Hemami
Isfahan University of Technology
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Mohammad Kaboli
University of Tehran
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Farzin Shabani
Qatar University College of Arts and Sciences
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Species distribution models (SDMs) are practical tools to assess the habitat suitability of species with numerous applications in environmental management and conservation planning. The manipulation of the input data to deal with their spatial bias is one of the advantageous methods to enhance the performance of SDMs. However, the development of a model parameterization approach covering different SDMs to achieve well-performing models has never been implemented. We integrated input data manipulation and model tuning for four commonly-used SDMs; generalized linear model (GLM), gradient boosted model (GBM), random forest (RF), and maximum entropy (MaxEnt), and compared their predictive performance to model geographically imbalanced biased data of a rare species complex of mountain vipers. Models were tuned up based on a range of model-specific parameters considering two background selection methods; random and background weighting schemes. The performance of the fine-tuned models was assessed based on a recently identified localities of the species. The results indicated that although the fine-tuned version of all models shows great performance in predicting training data (AUC > 0.9 and TSS > 0.5), they produce different results in classifying out-of-bag data. The GBM and RF with higher sensitivity of training data showed more different performances. The GLM, despite having high predictive performance for test data, showed lower specificity. It was only the MaxEnt model that showed high predictive performance and comparable results for identifying test data in both random and background weighting procedures. Our results highlight that while GBM and RF are prone to overfitting training data and GLM over-predict non-sampled areas MaxEnt is capable of producing results that are both predictable (extrapolative) and complex (interpolative). We discuss the assumptions of each model and conclude that MaxEnt could be considered as a practical method to cope with imbalanced-biased data in species distribution modeling approaches.
18 Sep 2022Submitted to Ecology and Evolution
19 Sep 2022Submission Checks Completed
19 Sep 2022Assigned to Editor
26 Sep 2022Reviewer(s) Assigned
03 Nov 2022Review(s) Completed, Editorial Evaluation Pending
12 Jan 2023Editorial Decision: Revise Minor
15 Jan 20231st Revision Received
16 Jan 2023Review(s) Completed, Editorial Evaluation Pending
16 Jan 2023Submission Checks Completed
16 Jan 2023Assigned to Editor
30 Jan 2023Editorial Decision: Accept